New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	382179 =	NA (NA)	9 (0.640)	7/306	0.4	NA	noncoding (920/1331 nt)	IS2	repeat region
	?	NC_000913	= 382590	NA (NA)					noncoding (1331/1331 nt)	IS2	repeat region

GCAGAGAGCTTCGTGAAAACGATAAAGCGTGACTACATCAGTATCATGCCCAAACCAGACGGGTTAACGGCAGCAAAGAACCTTGCAGAGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAATTACCTATCAGGCAGTTTGCGCCAATCACTACCGGACCCTGAATAACGGCACCATGACAAATACGGGTATTCGCGCCGATAACAACTTCACCTGCAGTTTCATCAATAATTACCTGGTCTGCAATCTGAATATTTTTCTCTTTAACATTAAGCTTCAGATAGTTTTTCAGTTCCTGTGACAGAAGGTTGGGAATAAGCGGTTGACGCTTCCACCAGTGCGGAATAGCGGGTGGGTTTGTCGC  >  NC_000913/382370‑382833                                                                                                                                                                                                                             |                                                                                                                                                                                                                                                    gCAGAGAGCTTCGTGAAAACGATAAAGCGTGACTACATCAGTATCATGCCCAAACCAGACGGGTTAACGGCAGCAAAGAACCTTGCAGAGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAATTACCTATCAGGc                                                                                                                                                                                                                                       <  1:241833/235‑1 (MQ=35)                                                                                            cGTTCGAGCATTCTAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAATTACCTATCAGGCAGTTTGCGCCAATCACTACCGGACCCTGAATAACGGCACCATGACAAATACGGGTATTCGCGCCGATAACAACTTCACCTGCAGTTTCATCAATAATTACCTGGTCt                                                                                                                            >  1:75692/1‑251 (MQ=255)                                                                                                                   cATCCGCANANNNCNNTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTNATGGGTTAAGTGATANCANATGTNTGGNAATATAGGGGCAAATCCAATTACCTATCAGGCAGTTTGCGcc                                                                                                                                                                                                                             >  2:220873/1‑131 (MQ=255)                                                                                                                   cATCAGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATTGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAATTACCTATCAGGCAGTTTGCGcc                                                                                                                                                                                                                             <  1:220873/131‑1 (MQ=255)                                                                                                                                            gctcgcCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATACCAGATGTCTGGAAATCTAGGGACAAATACACTTAACTCTCAGGCAGTTTGCGCCACTCACTACCGGACCCTGAATAACGGCACCATGACAAATACGGGTATTCGCGCCGATCACAACTTc                                                                                                                                                           >  1:130006/1‑172 (MQ=25)                                                                                                                                               ngcCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAATTACCTATCAGGCAGTTTGCGCCAATCACTACCGGACCCTGAATAACGGCACCATGACAAATACGGGTATTCGCGCCGATAACAACTTCACCTGCAGTTTCATCAATAATTACCTGGTCTGCAATCTGAATATTTTTCTCTTTAACATTAAGCTTCAGa                                                                                     >  1:84542/2‑239 (MQ=255)                                                                                                                                               cgcCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAATTACCTATCAGGCAGTTTGCGCCAATCACTACCGGACCCTGAATAACGGCACCATGACAAATACGGGTATTCGCGCCGATAACAACTTCACCTGCAGTTTCATCAATAATTACCTGGTCTGCAATCTGAATATTTTTCTCTTTAACATTAAGCTTCAGATAGTTTTTCan                                                                          <  1:83101/250‑2 (MQ=255)                                                                                                                                                             cTGCGGCAGCGGGCTTGTAATGGGTTCAGTGATAACAGATGGCTGGAAAGATAGGGGCAAATAACATTACATATCCGGCAGTCTGCGACAATCACTACCGGACCCTGAATAACGGCACCATGACAAATACGGGAATTCGCGCCGATCACAACTTCACCTGCACTTTCATCAATAATTACCTGGTCTGCAATCTGAATAATTTTCTCTTTACCATTCAGCTTCAGATAGTTTTTCAGTTCCTGTGagctcgg                                                           >  1:288777/1‑245 (MQ=255)                                                                                                                                                                 ggCAGCGGGCTTGGAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAATTACCTATCAGGCAGTTTgc                                                                                                                                                                                                                                <  1:52359/82‑1 (MQ=255)                                                                                                                                                                                  gggTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAATTACCTATCAGGCAGTTTGCGCCAATCACTACCGGACCCTGAATAACGGCACCATGACAAATACGGGTATTCGCGCCGATAACAACTTCACCTGCAGTTTCATCAATAATTACCTGGTCTGCAATCTGAATATTTTTCTCTTTAACATTAAGCTTCAGATAGTTTTTCAGTTCCTGTGACAGAAGGTTGGGAATAAGCGGTTGAc                                       <  1:89292/250‑1 (MQ=255)                                                                                                                                                                                                       ntGGAAATATAGGGGCAAATCCAATTACCTATCAGGCAGTTTGCGCCAATCACTACCGGACCCTGAATAACGGCACCATGACAAATACGGGTATTCGCGCCGATAACAACTTCACCTGCAGTTTCATCAATAATTACCTGGTCTGCAATCTGAATATTTTTCTCTTTAACATTAAGCTTCAGATAGTTTTTCAGTTCCTGTGACAGAAGGTTGGGAATAAGCGGCTGACGCTTCCACCAGTGCGGAATAGc                 >  1:96953/2‑251 (MQ=255)                                                                                                                                                                                                                      cAAATCCAATTTCCTATCAGGCAGTTTTCGCCAATCACGACCGGACCCTGAATAACGGCACCATGACAAATACTGGTATTCGCGCCGATAACAACTTCACCTGCAGTTTCATCAATAATTACCTGGTCTGTAATCTGAAGATTTTTCTCTTTAACATTAATCTGCATATAGTTTTTCAGTTCCTGTGACAGGATGTTGGTAATAAGCGGTTGACGCTTCCACCAGTGCGGAATAGCGGGTGGGTTTGTcgc  <  1:174911/251‑1 (MQ=255)                                                                                                                                                                                                                             |                                                                                                                                                                                                                                                    GCAGAGAGCTTCGTGAAAACGATAAAGCGTGACTACATCAGTATCATGCCCAAACCAGACGGGTTAACGGCAGCAAAGAACCTTGCAGAGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAATTACCTATCAGGCAGTTTGCGCCAATCACTACCGGACCCTGAATAACGGCACCATGACAAATACGGGTATTCGCGCCGATAACAACTTCACCTGCAGTTTCATCAATAATTACCTGGTCTGCAATCTGAATATTTTTCTCTTTAACATTAAGCTTCAGATAGTTTTTCAGTTCCTGTGACAGAAGGTTGGGAATAAGCGGTTGACGCTTCCACCAGTGCGGAATAGCGGGTGGGTTTGTCGC  >  NC_000913/382370‑382833

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.