| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,682,261 | Δ34 bp | coding (1154‑1187/1287 nt) | dctA ← | C4 dicarboxylate/orotate:H(+) symporter |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3682261 | 3682294 | 34 | 15 [0] | [0] 15 | dctA | C4 dicarboxylate/orotate:H(+) symporter |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3682260 | 0 (0.000) | 15 (1.070) | 13/306 | 0.1 | 100% | coding (1188/1287 nt) | dctA | C4 dicarboxylate/orotate:H(+) symporter |
| ? | NC_000913 | 3682295 = | 0 (0.000) | coding (1153/1287 nt) | dctA | C4 dicarboxylate/orotate:H(+) symporter | |||||
AAAATGTCACGGAAGAAGTGAAATAAACCTGAACTCACCCAGGTGGTAAGTTCAGGCACAGGGGTCAATTATGCGCAAACACCCGCACTCGGGGAAGGGAGTGCGGGCATAAGTGATGAGATTAAGAGGATAATTCGTGCGTTTTGCCATCCGGCGCACGATTATTCAGCACATCGTCCAGTTTTTTGTGGTCCAGTTCTTTCACCCACTTAGCAACGACAATGGTCGCTACGCCGTTACCGACCAGGTTAGTCAGCGCACGAGCTTCTGACATAAAGCGGTCGATACCGAGGATCAGCGCCAGACCCGCTACCGGCAAATGGCCCACCGCAGAGAGCGTCGCCGCCAGCACGATAAAGCCACTACCCGTTACCCCTGCCGCCCCTTTAGAAGAAAGCAGCAACACGATTAAC > NC_000913/3682040‑3682452 | aaaaTGTCACGGAAGAAGTGAAATAAACCTGAACTCACCCAGGTGGTAAGTGCAGGCACAGGGGTCAATTATGCGCAAACACCCGCCCTCGGGGAAGGGAGTGCGGGCATAAGTGATGAGATTAAGAGGATAATTCGTGCGTTTTGCCATCCGGCGCACGATTATTCAGCACATCGTCCAGTTTTTTGTGGTCCAGTTCTTTCACCCACTTAGCAACGACAgcgcacgagcttctgacataaagcggtcga < 1:2466‑M1/251‑31 (MQ=255) tGTCACGGAAGAAGTGAAATAAACCTGAACTCACCCAGGTGGTAAGTTCAGGCACAGGGGTCAATTATGCGCAAACACCCGCACTCGGGGAAGGGAGTGCGGGCATAAGTGATGAGCTTAAGAGGATAATTCGTGCGTTTTGCCATCCGGCGCACGATTATTCAGCACATCGTCCAGTTTTTTGTGGTCCAGTTCTTTCACCCACTTAGCAACGACAgcgcacgagcttctgacataaagcggtcgatacc > 1:300155‑M1/1‑217 (MQ=255) aGTTCAGGCACAGGGGTCAATTATGCGCAAACACCCGCACTCGGGGAAGGGAGTGCGGGCATAAGTGATGAGATTAAGAGGATAATTCGTGCGTTTTGCCATCCGGCGCACGATTATTCAGCACATCGTCCAGTTTTTTGTGGTCCAGTTCTTTCACCCACTTAGCAACGACAgcgcacgagcttctgacataaagcggtc > 1:24240‑M1/1‑173 (MQ=255) gTCAATTATGCGCAAACACCCGCACTCGGGGAAGGGAGTGCGGGCATAAGTGAGGAGATTAAGAGGATAATTCGTGCGTTTTGCCATCCGGCGCACGATTATTCAGCACATCGTCCAGTTTTTTGTGGTCCAGTTCTTTCACCCACTTAGCAACGACAgcgcacgagcttctgacataaagcggtcgataccgaggatcagcgccagacccgctacc < 1:16014‑M1/217‑60 (MQ=255) cgcAAACACCCGCACTCGGGGACGGGAGTGCGGGCATAAGTGATGAGATTAAGAGGATAATTCGTGCGTTTTGCCATCCGGCGCACGATTATTCAGCACATCGTCCAGTTTTTTGTGGTCCAGTTCTTTCACCCACTTAGCAACGACAgcgcacgagcttc > 1:129962‑M1/1‑148 (MQ=255) gAAGGGAGTGCGGGCATAAGTGATGAGATTAAGAGGATAATTCGTGCGTTTTGCCATCCGGCGCACGATTATTCAGCACATCGTCCATTGTTTTGTGTGCCAGTTCTTTCACCCACTTAGCAACGACAgctcacgagcttctgacataaatcgtgcgagaccgaggatcagcgccagacccgctaccggcaaatggcccaccgcagagagcgtcgc < 1:300441‑M1/216‑89 (MQ=255) cGGGCATAAGTGATGAGATTAAGAGGATAATTCGTGCGTTTTGCCATCCGGCGCACGATTATTCAGCACATCGTCCAGTTTTTTGTGGTCCAGTTCTTTCACCCACTTAGCAACGACAgcgcacgagcttctgacataaagcggtcgataccgaggatcagcgccagacccgctaccggcaaatggcccac < 1:173678‑M1/191‑74 (MQ=255) tgatattaaGAGGATAATTCGTGCGTTTTGCCATCCGGCGCACGATTATTCAGCACATCGTCCAGTTTTTTGTGGTCCAGTTCGTTCACCCACTTAGCAACGACAgcgcacgagcttctgacataaagcggtcgataccgaggatcagcgccagacccgctaccggcaaatggcccacc < 1:216545‑M1/175‑75 (MQ=255) agaTTAAGCGGATAATTCGTGCGTTTTGCCATCCGACGCACGATTATTCAGCACATCGTCCAGTTTTTTGTGGTCCAGTTCTTTCACCCACTTAGCAACGACAgcgcacgagcttctgacataaagcggtcaataccgaggatcagcgccagacccgctaccggcaaatggcccaccgcagagagcgtcgcccccagcacgataaagccactacccgttacccctgccgcccctttagaagaaagcagca > 1:275682‑M1/1‑103 (MQ=255) tttGCCATCCGGCGCACGATTATTCAGCACATCGTCCAGTTTTTTGTGGTCCAGTTCTTTCACCCACTTAGCAACGACAgcgcacgagcttctgacataaagcggtcgataccgaggatcagcgccagacccgctaccggcaaatggcccaccgcagagagcgtcgccgccatcacgataaagccactacccgttacccctgcn < 1:82907‑M1/204‑126 (MQ=255) ngcgcaCNNTTATTCAGCACATCGTCCAGTTTTTTGTGGTCCAGTTCTTTCACCCACTTAGCAACGACAgcgcacgagcttctgacataaagcggtc < 2:24240‑M1/96‑29 (MQ=255) attattCAGCACATCGTCCAGTTTTTTGTGGTCCAGTTCTTTCACCCACTTAGCAACGACAgcgcacgagcttctgacataaagcggtcgataccgaggatcagcgccagacccgctaccggcaaatggcccancgcnnnnngcnnnnnn > 2:199782‑M1/1‑61 (MQ=255) attCAGCACATCGTCCAGTTTTTTGTGGTCCAGTTCTTTCACCCACTTAGCAACGACAgcgcacgagcttctgacataaagcggtcgataccgaggatcagcgccagacccgctaccggcaaatggcccaccgcagagagcgtcgccgccagcacgataaagccactacccgttacccctgccgcccctttagaagaaagcagcaacacgattaacagcgtgatttggtggacgatatccatctgactgn < 1:199782‑M1/250‑193 (MQ=255) cAGCANATNGNCCNNTNTTTTNTGGTCCAGTTCTTTCACCCACTTAGCAACGACAgc > 2:161913‑M1/1‑55 (MQ=255) cAGCACAGCGTCCAGTTTTGTGTGGTCCAGTTCTTTCACCCACTTAGCAACGACAgc < 1:161913‑M1/57‑3 (MQ=255) | AAAATGTCACGGAAGAAGTGAAATAAACCTGAACTCACCCAGGTGGTAAGTTCAGGCACAGGGGTCAATTATGCGCAAACACCCGCACTCGGGGAAGGGAGTGCGGGCATAAGTGATGAGATTAAGAGGATAATTCGTGCGTTTTGCCATCCGGCGCACGATTATTCAGCACATCGTCCAGTTTTTTGTGGTCCAGTTCTTTCACCCACTTAGCAACGACAATGGTCGCTACGCCGTTACCGACCAGGTTAGTCAGCGCACGAGCTTCTGACATAAAGCGGTCGATACCGAGGATCAGCGCCAGACCCGCTACCGGCAAATGGCCCACCGCAGAGAGCGTCGCCGCCAGCACGATAAAGCCACTACCCGTTACCCCTGCCGCCCCTTTAGAAGAAAGCAGCAACACGATTAAC > NC_000913/3682040‑3682452 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |