| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC JC | NC_000913 | 2,319,850 | IS2 (+) +5 bp | coding (23‑27/2850 nt) | rcsC ← | histidine kinase RcsC |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 2068941 = | NA (NA) | 17 (1.200) | 16/310 | 0.0 | 100% | noncoding (1331/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | 2319850 = | 0 (0.000) | coding (27/2850 nt) | rcsC | histidine kinase RcsC | |||||
| * | ? | NC_000913 | = 2319854 | 0 (0.000) | 18 (1.270) | 15/310 | 0.1 | 100% | coding (23/2850 nt) | rcsC | histidine kinase RcsC |
| ? | NC_000913 | = 2997691 | NA (NA) | noncoding (1/1331 nt) | IS2 | repeat region | |||||
GGGAAAGCACACCGTTTTCTGCCGATAAGCGATTTTCGGCGATGTACTTCAGCTCTTTCATCACATCAGAGGTGCGTTGAATAAAGCGCTGAGCCTGATCGGAACTCAGATTAAATTCCTGACGAATTTCCGATTCTCGCTGATGTAACGCATTAACGATGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAATGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAAAGAAGCAAGGTATTTCAAAGGGGCGAAGCTCCGCCTCAGGTGACCGATGGAGTGTGGTTAAGGTAGCGGTAAAAGCGTGTTACCGCAATGTTCTCTCTTCTCTGGAATATGATACACCGCCGAGAAATCATCACCTTAACCTCTGATAATCGTCATATACCGGACAAGACTAGTGGATTTCAGCATGCATTATATGAAGTGGATTTATCCACGC > NC_000913/2319609‑2320072 | gggaactcacaccgttttCTGCCGATAAGCGATGTTCGGCGATTTTCTTCAGCTCTTTCATCACAGCAGAGGTGCGTTGAATAAAGCGCTGAGCCTGATCGGAACTCAGATTAAATTCCTGACGAATTTCCGATTCTCGATGATGTAACGCATTAACGATGTAAAAAACGGAAGAAAAAGCAATCAACAGCCAGAGCACGAACGCCAAGGCTCTGAACAAGTAGCTCTAGGCTTTCAGTGTTGTATtagac < 1:251931‑M1/244‑6 (MQ=255) gAAAGCACACCGTTTTCTGCCGATAAGCGATTTTCGGCGATGTACTTCAGCTATTTCATAACATCAGAGGTGCGTTGAATAAAGCGCTGAGCCTGATCGGAACTCAGATTAAATGCCTGACGAATTTCCGATTCTCGCTGATGTACCGCATTAACGATGAAAAAAACAGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCGATTCTCTAAACATGTAGCGCGAGGCTTTCAGAGTTGTACtagactg > 1:234361‑M1/1‑244 (MQ=255) aacggaatagcagagagcttcgtgaaaacgataaagcgtgactacatcagtatcatgcccaaaccagacgggttaacggcagcaaagaaccttgcagaggcgttcgagcattataacgaatggcatccgcatagttcgctgggttatctctcgccacggttatatctgctgcagcgggcatgtaatgtgttaagtgagaacagatgtctggaaatataggagcaaatccaTGTACGAAAAGAAGCAAGGt < 1:313018‑M2/20‑1 (MQ=255) tGCCGATAAGCGATTTTCGGCGATGTACTTCAGCTCTTTCATCACATCAGAGGTGCGTTGAATAAAGCGCTGAGCCTGATCGGAACTCAGATTAAATTCCTGACGAATTTCCGATTCTCGCTGATGTAACGCATTAACGATGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAATGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACtagactggccccctgaatctcc < 1:73473‑M1/249‑23 (MQ=255) gagagcttcgtgaaaacgataaagcgtgactacatcagtatcatgcccaaaccagacgggttaacggcagcaaagaaccttgcagaggcgttcgagcattataacgaatggcatccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaTGTACGAAAAGAAGCAAGGTATTTCAAAGGGGc < 1:74253‑M2/33‑1 (MQ=255) gaaaacgataaagcgtgactacatcagtatcatgcccaaaccagacgggttaacggcagcaaagaaccttgcagaggcgttcgagcattataacgaatggcatccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaTGTACGAAAAGAAGCAAGGTATTTCAAAGGGGCGAAGCTCCGcc < 1:111424‑M2/44‑1 (MQ=255) aCTTCAGCTCTTTCATCACATCAGAGGTGCGTTGAATAAAGCGCTGAGCCTGATCGGAACTCAGATTAAATTCCTGACGAATTTCCGATTCTCGCTGATGTAACGCATTAAAGATGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAAAGCCAATGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACtagcctggcccactgaatctcccgacaaccaatatcacttaaataaggg > 1:17752‑M1/1‑201 (MQ=255) cTTCAGCTCTTTCATCACATCAGAGGTGCGTTGAATAAAGCGCTGAGCCTGATCGGAACTCAGATTAAATTCCTGACGAATTTCCGATTCTCGCTGATGTAACGCATTAACGATGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAATGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACtagactggccccctgaatctccagacaac < 1:104120‑M1/229‑30 (MQ=255) gCTCTTTCATCACATCAGAGGTGCGTTGAATAAAGCGCTGAGCCTGATCGGAAATCAGATTAAATTCCTGACGCATTTCCGATTCTCGCTGATGTAACGCATTAACGATGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAATGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACtagactgg > 1:176660‑M1/1‑195 (MQ=255) cccaaaccagacgggttaacggcagcaaagaaccttgcagaggcgttcgagcatcataacgaatggcatccgcctagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggcaatataggggcaaatccaTGTACGAAAAGAAGCAAGGTATTTCAAAGGGGCGAAGCTCCGCCTCAGGTGACCGATGGAGTGTGGTTAAGGTAGCgg > 1:314990‑M2/174‑251 (MQ=255) gttaacggctgcaaagaaccttgccgaggcggtcgagcagtataacgaatggcatccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggtgaagttataacatttgtctggaaatatagggtcaaatccaTGTACGAAAAGAAGCAAGGTATTTCAAAGGGTGTAAGCTCCGCCTCAGGTGGCCGATGGAGTGTGGTTAAGGTAGCGGTAAAAGCGTGTTAc < 1:231838‑M2/92‑1 (MQ=255) aaaGCGCTGAGCCTGATCGGAACTCAGATTAAATTCCTGACGAATTTCCGATTCTCGCTGATGTAACGCATTAACGATGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAATGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggaga < 1:188930‑M1/251‑88 (MQ=255) gcaaagaaccttgcagaggcgttcgagcattataacgaagggcatccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggctggtaatgggttaagtgagaacagatgtctggaaatataggggcaaatccaTGTACGAAAAGAAGCAAGGTATTTc < 1:155674‑M2/25‑1 (MQ=255) gCCTGATCGGAACTCAGATTAAATTCCTGACGAATTTCCGATTCTCGCTGATGTAACGCATTAACGATGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAATGCTATGAACATGTAGCGCGAGGCTTTCAGGGTTGTACtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactag > 1:52509‑M1/1‑154 (MQ=255) gATCGGAACTCAGATTAAATTCCTGACGAATTTCCGATTCTCGCTGATGTAACGCATTAACGATGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAATGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattgaagaacagatgattgatg < 1:258484‑M1/251‑102 (MQ=255) gttcgagcattataacgaatggcatccgcatagtgcgcagggttatcgctcgccacgggattctctgcggcagcgggcttgtaatgggttcagtgataacagatgtctggaaatataggggccaatccaTGTACGAAAAGAAGCAAGGTATTTCAAAGGGGCGAAGCTCCGCCTCAGGTGACCGATGGAGTGTGGTTAAg > 1:43318‑M2/130‑200 (MQ=255) cGAATTTCCGATTCTCGCTGATGTAACGCATTAACGATGTACAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAATGATCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACtagactggccccctacatctcaagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtcttagggccggagaaacg > 1:263626‑M1/1‑124 (MQ=255) ccGATTCTCGCTGATGTAACGCATTAACGATGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGACAATGCGCTGAACATGTATCGCGATGTGTTCAGGGTTGGACtagtctgtccccctgtatctctagactaccaatatcacttaaataagtgatagtcttaatactagtttttagactat < 1:238374‑M1/194‑78 (MQ=255) ccGATNNTCNNNGCNNTCACGCATTAACGATGTAAAAAANGGATGAAAAAGCAATCAACAGCCAGAGCANTNANGCCANNGCTNTGAACATGTANCGCGAGGCTTTCAGGGTTGTACtagactggccccctgaatctcaagacnancaatatcacttaaataagtgctagtcttaatnctagtttttagactag > 2:238374‑M1/1‑117 (MQ=255) gcatccgcatagtgcgctgggttatcgctcgccacgggaatagctggggcagcgggcgggtaatgggttaagtgataacagatgtctggaaatataggggcaaatcgaTGTACGAAAAGAAGCAAGGGAGGGCAAAGGGGCGAAGCTCCGCCTCAGGTGACCGAtgn < 1:38629‑M2/59‑2 (MQ=255) ccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaTGTACGAAAAGAAGCAAGGTATTTCAAAGGGGCGAAGCTCCGCCTCAGGTGACCGATGGAGTGTGGTTAAGGTAGCGGTAAAAGCGTGTTACCGCAATGTTCTCTCTTCTCTGGAATATGATaca > 1:73968‑M2/105‑229 (MQ=255) cGCATTAACGATGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAATGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACtagactggccccctgaatctccagacaaccaatatnactnnnnnaann > 2:203488‑M1/1‑98 (MQ=255) ctcgccaagggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggcgcaaatcccTGCACGAAaaga > 1:330976‑M2/82‑93 (MQ=255) aaaCGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAATGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgatcgatgtcttagggccggagaaacgcagacggagtaccacacaggaaaagatcgcaattgttcagcagagctttn < 1:261638‑M1/251‑171 (MQ=255) cgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaTGTACGAAAAGAAGCAAGGTATTTCAAAGGGGCGAAGCTcc > 1:154769‑M2/75‑115 (MQ=255) gAAAAAGCAGTCAACAGCCAGAGCACTAACGCCAATGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtcttagggccggagaaacgcagacggcgtaccacacaggaaaagatcgcaattgttcagcagagctttgaac > 1:76414‑M1/1‑73 (MQ=255) atntgcngnngnnggcntgtaatgggttaagtgataaannatgtctgganatataggggcaaagccaTGTACGAAAAGAAGCAAGGTATTTCAAAGGGGCGAANCTCCGCCTCNNGTNACCGANGNNNTNNNGTNAAGGTAGCGGTAAAAGCGTNTTNNCGCAATNTTCTCTCTTCTCTGGAATATGATaca < 2:73968‑M2/125‑1 (MQ=255) cAATCAACAGCCAGAGCACTAACGCCAATGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACtagactggccccctgcatctccagacaaccaatatcacttacataagtgatagtcttaatactagtttttagactagtacttggagaacagatgattgatgtcttagggccggagcaacgcagacggcgtaccacacaggaaaagatcgcaattgttcagcagagctttgaaccggggatgacgg > 1:215414‑M1/1‑66 (MQ=255) aTCAACAGCCAGAGCACTAACGCCAATGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtcttagggccggagaaacgcagacggcgtaccacacaggaaaagatcgcaattgttcagcagagctttgaaccggggatgacggtc > 1:10528‑M1/1‑64 (MQ=255) gcgggcttgtaatgggttaagtgagaacagatgtctggaaatatatgggcaaatccaTGTACGAAAAGAAGCAAGGTATTTCAAAGGGGCGAAGCTCCGCCTCAGGTGACCGATGGAGTGTGGTTAAGGTAGc < 1:208009‑M2/76‑1 (MQ=255) cttgtaatgtgttaagtgataacagatgtctggaaatataggggcaaatccaTGTACGAAAAGAAGCAAGGTATTTCAAAg < 1:294205‑M2/29‑1 (MQ=255) nccaATGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACtagcctggccccctgaa > 1:28811‑M1/2‑43 (MQ=255) gatgtctggaaatataggggcaaatccaTGTACGAAAAGAAGCAAGGTATTTCAAAGGGGCGAAGCTCCGCCTCAGGTGACCGATGGAGTGTGGTTAAGGTAGCGGTAAAAGCGTGTTCCCGCAATGTTCTCTCTTCTCTGGAATATGATACACCGCCGAGAAATCATCACCGTAACCTCTGATAATCGTCATATACCGGACAAGACTAGTGGATTTCAGCATGCATTATATGAAGTGGATTTATCCAcgc < 1:234834‑M2/223‑1 (MQ=255) | GGGAAAGCACACCGTTTTCTGCCGATAAGCGATTTTCGGCGATGTACTTCAGCTCTTTCATCACATCAGAGGTGCGTTGAATAAAGCGCTGAGCCTGATCGGAACTCAGATTAAATTCCTGACGAATTTCCGATTCTCGCTGATGTAACGCATTAACGATGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAATGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAAAGAAGCAAGGTATTTCAAAGGGGCGAAGCTCCGCCTCAGGTGACCGATGGAGTGTGGTTAAGGTAGCGGTAAAAGCGTGTTACCGCAATGTTCTCTCTTCTCTGGAATATGATACACCGCCGAGAAATCATCACCTTAACCTCTGATAATCGTCATATACCGGACAAGACTAGTGGATTTCAGCATGCATTATATGAAGTGGATTTATCCACGC > NC_000913/2319609‑2320072 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |