| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC JC | NC_000913 | 2,269,876 | IS5 (+) +4 bp | intergenic (+309/‑100) | lpxT → / → mepS | lipid A‑core phosphotransferase/peptidoglycan endopeptidase/peptidoglycan L,D‑carboxypeptidase |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 2269876 = | 0 (0.000) | 23 (1.630) | 19/308 | 0.0 | 100% | intergenic (+309/‑103) | lpxT/mepS | lipid A‑core phosphotransferase/peptidoglycan endopeptidase/peptidoglycan L,D‑carboxypeptidase |
| ? | NC_000913 | 2288919 = | NA (NA) | noncoding (1195/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | = 2269879 | 0 (0.000) | 16 (1.130) | 14/310 | 0.1 | 100% | intergenic (+312/‑100) | lpxT/mepS | lipid A‑core phosphotransferase/peptidoglycan endopeptidase/peptidoglycan L,D‑carboxypeptidase |
| ? | NC_000913 | = 2290113 | NA (NA) | noncoding (1/1195 nt) | IS5 | repeat region | |||||
CGTGCTTTCATCTATCGAACGCAAAAATCATTCTCTAAGTAAATGAATGGATTGCATGCGTTTCACTCAATTGTACTTTAATTGACCAACCCCGCTTATTAACTTTCTGTATCACTTTTTCTTATAAAAAATCATGTAAAACCGCTCGCCAAGACCGCACCAATCGGGTAATCTCGAACTCGTTTTGCCTCGGCGGTAGATTATCCTCACAGCATATAATTTTGTGCGTTAGTCCACAGATTTGGCCTTAAGGAATTGTTTCAACATGCCCAGGTAATTAGTCTCGTGTCGCTTGGCATTTTTTTATAACGATATTTGTCGTTAAGGACTTCAAGGGAAAACAAACAACATGGTCAAATCTCAACCGATTTTGAGATATATCTTGCGCGGGATTCCCGCGATTGCAGTAGCGGTTCTGCTTTCTGCATGTAGTGCAAATAACACCGCAAAGAATATGCATCCTGAGACACGTGCAGTGGGTAGT > NC_000913/2269630‑2270113 | cGTGCTTTCATCTATCGAACGCAAAAATCATTCTCTAAGTAAATGAATGGATTGCATGCGTTTCACTCAATTGTACTTTAATTGACCAACCCCGCTTATTAACGTTCTGTAGCACTTTTTCTTATAAAAAATCATGTAAAACCGCTCGCCAAGACCGCACCAATCGGGTAATCTCGAACTCGTTTTGCCTCGGCGGTAGATTATCCTCACAGCACATAATTTTGTGCGTTAGTCCACAGATTTGGCCTTAg < 1:99450‑M1/251‑2 (MQ=255) ctgaaaaaagataaccaactggcgatgttattcacgctggacaacctgtttcgggcggaacaaatgatacgacagtgggagagatctcactaaacactggggatcacgtcttaaatggcgaagaaaaggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatggagaaatgaaatgactgagtcagccgagaagaatttccacgcttattcgcaccttccCTTAAGGAATTg < 1:225126‑M1/12‑1 (MQ=255) cacgctggccaacctgtttcgggcggaccaaatgatacgtcagtgggagagatctcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttatgcgcaccttccCTTAAGGAATTGTTTCAACATGCCCAGGTAATTAGTCTCGTGTc > 1:18883‑M1/208‑251 (MQ=255) gtttcgggcggaccaaatgatacgtcagtgggagagatctctctaaaaactggggataacgccgtaaatggcgaagaaacggtctaaatatgctgattcaaggcatgtacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTTAAGGAATTGttt > 1:179783‑M1/193‑207 (MQ=255) gaccaacttatacgtcagtgggagagatctcactaaaaactggggataacgccttaaatggcgacgacacagtctaaaaaggctgattcaaggcatttactgaagaaaaactcggctaaaacatgaagacatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttacCTTAAGGAATTGTTTCAACATGCCCAGGTAATTAGTCTATTGTCGCTTGGCATTTTTTTATAACGatat < 1:237644‑M1/69‑1 (MQ=255) gaccaaatgatacgtcagtgggagagatctcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTTAAGGAATTGTTTCAACATGCCCTGGTAATTAGTCTCGTGTCGCTTGGCATTTTTTTATAACGatat < 1:237658‑M1/69‑1 (MQ=255) gTACTATAATTGACCAACCCCGCTTATTAGCTTTCTGTATCACTTTGTCTTATAAAAAATCATGTAAAACCGCTCGCCAAGACCGCACCAATCGGGTAATCGCGAACTCGTTTTGCCTCGGCGGTAGATTATCCTCACAGCATATATTTTTGTGCGTTAGTCTACAGAGTTGGCTTTAggaaggggcgaacaagtctctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgag < 1:150168‑M1/251‑74 (MQ=255) agagatctcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggcgcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttatgcgcaccttccCTGAAGGAATTGTTGCAACATGTCCAGGTAATTAGTCTCTTGTCGCTTGGCATTTTTTGATAACGATTTTTGTCGTTAAGGACTTCAAggg > 1:267032‑M1/161‑251 (MQ=255) ctaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaacaatcggctcaaacatgaagaaatgaaatgactgagtcagccgcgaagaatttccccgcttattcgcccctttcCTTAAGGAATTGTTTCAACATGCCCAGGTAATTAGTCTCGTGTCGCTTGGCATTTTTTTATAACGATATTTGTCGTTAAGGACTTCACGGGAaaacaaac < 1:322304‑M1/100‑1 (MQ=255) ggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTTAAGGAATTGTTTCAACATGCCCAGGTAATTAGTCTCGTGTCGCTTGGCATTTTTTTATAACGATATTTGTCGTTAAGGACTTCAAGGGAAAACAAACAACATGGTCaa < 1:98524‑M1/111‑1 (MQ=255) ttttCTTATAAAAAATCATGTAAAACCGCTCGCCAAGACCGCACCAATCGGGTAATCTCGAACTCGTTTTGCCTCGGCGGTAGATTATCCTCACAGCATATAATTTTGTGCGTTAGTCCACAGATTTGGCCTTAgtaaggtgcgaacaagtccctgagatgagatcatgtttgtcatctggagccatagaacagggtgcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgc < 1:160529‑M1/250‑117 (MQ=255) tttCTTATAAAAAATCATGTAAAACCGCTCGCCAAGACCGCACCAATCGGGTAATCTCGAACTCGTTTTGCCTCGGCGGTAGATTATCCTCACAGCATATAATTTTGTGCGTTAGTCCACAGATTTGGCCTTAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttacctgcgccgacagtgaattcagcagtaagcgcn < 1:81432‑M1/250‑118 (MQ=255) acggtctaaataggctgattcaaggcatttacgggagaaacaatcggctcaaacatgcagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTTAAGGAATTGTTTCAACATGCCCAGGTAATTAGTCTCGTGTCGCTTGGCATTTTTTTATAACGATATTTGTCGTTAAGGACTTCAAGGGAAAACAAACAACATGGTCAAATCTCAACAGATTTTGAGATATATCt < 1:318117‑M1/137‑1 (MQ=255) ggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTTAAGGAATTGTTTCAACATGCCCAGGTAATTAGTCTCGTGTCGCTTGGCATTCTTTTATAACGATATTTGTCGTTAAg > 1:24569‑M1/113‑192 (MQ=255) gattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTTAAGGAATTGTTTCAACATGCCCAGGTAATTAGTCTCGTGTCGCTTGGCATTTTTTTATAACGATATTTGTCGTTAAGGACTTCAAGGGAAAACAAACAACATGGTCAAATCTCAACCGATTTTGAGATATATCTTGCGCGGGATTCCcgc < 1:87261‑M1/153‑1 (MQ=255) ccGCACCAATCGGGTAATCTCGAACTCGTTTTGCCTCGGCGGTAGATTATCCTAACAGCATATAATTTTGTGCGTTAGTCCACAGCTTTGGCCTTAggacggtgcgaacaagtccccgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgcgtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtcccgcatgg > 1:218917‑M1/1‑96 (MQ=255) ggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagcctttccccgcttattcgcaccttccCTTAAGGAATTGTTTCAACATGCCCAGGTAATTAGTCTCGTGTCGCTTGGCATTTTTTTATAACGATATTTGTCGTTAAGGACTTCAAGGGAAAACAAACAACATGGTCAAATCTCAACCGATTTTGAGATATATCTTGCGCGGGATTCCCGCGATTGc < 1:155863‑M1/159‑1 (MQ=255) catttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTTAAGGAATTGTTTCAACATGCCCAGGTAATTAGTCTCGTGTCGCTTGGCATTTTTTTATAACGATATTTGTCGTTAAGGACTTCAAGGGAAAACAAACAACATGGTCAAATCTCAAc < 1:52208‑M1/119‑1 (MQ=255) nggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccacgcttattcgcaccttccCTTAAGGAATTGTTTCAACATGCCCAGGTAATTAGTCTCGTGTCGCTTGGCATTTTTTTATAACGATATTTGTCGTTAAGGACTTCAAGGGAAAACAAACAACATGGTCAAATCTCAACCGATTTTGAGATATATCTTGCGCGGGATTCCCGCGATTGCAGTAGCGGtt < 1:59639‑M1/169‑1 (MQ=255) gggTAATCTCGAACTCGTTTTGCCTCGGCGGAAGATTATCCTCACAGCATATAATTTTGTGAGTTAGTCCACAGATTTGGCCTTAggaaggggcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaaga > 1:290344‑M1/1‑85 (MQ=255) aatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttcaccgcttattcgcaccttccCTTAAGGAATTGTTTCAACATGCCCAGGTAATTAGTCTCGTGTCGCGTGGCATTTTTTTATAACGATATTTGTCGTTAAGGACTTCAAGGGAAAACAAACAACATGGGCAAATCGCAAACGAGTTTGAGATATATCTTGCGCGGGATGCCCGCGATTGCAGTAGCGGTTCTGCTTTCt > 1:141956‑M1/74‑251 (MQ=255) atcggctcaaacatgaagaaatgaaatgactgagtaagccgagaagaatttccccgcttattcgcaccttccCTTAAGGAATTGTTTCAACATGCCCAGGTAATTAGTCTCgtg < 1:122780‑M1/42‑1 (MQ=255) ggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTTAAGGAATTGTTTCAACATGCCCAgg < 1:323778‑M1/28‑1 (MQ=255) tcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTTAAGGAATTGTTTCAACATGNNCAGGTANnt < 2:15350‑M1/33‑1 (MQ=255) tcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTTAAGGAATTGTTTCAACATGCCCAGGTAATTAGTCTCGTGTCGCTTGGCATTTTTTTATAACGATATTTGTCGTTAAGGACTTCAAGGGAAAACAAACAACATGGTCAAATCTCAACCGATTTTGAGATATATCTTGCGCGGGATTCCCGCGATTGCAGTAGCGGTTCTGCtt > 1:15350‑M1/67‑241 (MQ=255) tcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTTAAGGAATTGTTTCAACATGCCCAGGTAATTAGTCTCGTGTCGCTTGGCATTTTTTTATAACGATATTTGTCGTTAAGGACTTCAAGGGAAAACAAACAACATGGTCAAATCTCAACCGATTTTGAGATATATCTTGCGCGGGATTCCCGCGATTGCAGTAGCGGTTCTGCTTTCTGCATGt < 1:273843‑M1/184‑1 (MQ=255) cGTTTTGCCTCGGCGGTAGATTATCCTCACAGCATATAATTTTGTGCGTTAGTCCACAGATTTGGCCTTAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacaggggtcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtcccgcatggagcagattctgccatggcaaaacatgn < 1:31426‑M1/250‑181 (MQ=255) aatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTTAAGGAATTGTTTCAACATGCCCAGGTAATTAGTCTCGTGTc > 1:9499‑M1/54‑97 (MQ=255) aatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTTAAGGAATTGTTTCAACATGCCCAGGTAATTAGNNTcgtgtn < 2:9499‑M1/44‑2 (MQ=255) gTAGATTATCCTCACAGCATATAATTTTGTGCGTTAGTCCACAGATTTGGCCTTAggaaggtgcgcaccagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagacaagagattttcttgtcccgcatggagcagattctgccatggcaaaacatggtggaagtca > 1:181332‑M1/1‑55 (MQ=255) aGCATATAATTTTGTGCGTTAGTCCACAGATTTGGCCTTCggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtcccgcatggagcagattctgccatggcaaaacatggtggaagtcatcgagccgttttacaccaaggc > 1:139860‑M1/1‑40 (MQ=255) gtgCGTTAGTCCACAGATTTGGCCTTAggaaggtgcgaacaagtccctgatatgagatcatgtttggcatctggagccatagaacagggttcatcatgagttatcaacttaccttcgccgacagtgaatgcagcagtaagcgccgtcagaccagaaaagagatttgcttgtcccgcatggagcagattctgccatgggaaagcatggtggaagtcatcgagccgttttaccccaaggctggtaatggccgg < 1:172813‑M1/251‑225 (MQ=255) cgcttattcgcaccttccCTTCAGGAATTGTTTCAACACGCCCAGGTAATTAGTCTCGTGTCGCTTGGCATTTTTTTATAACGATATTTGTc < 1:104882‑M1/74‑1 (MQ=255) ccACAGATTTGGCCTTAggaaggtgcgaacaagtccctgatctgagatcatgtttgtcatctggagccatagaccagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtcccgcatggagcagattctgccatgg > 1:327806‑M1/1‑17 (MQ=255) ccACAGATTTGGCCTTAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtcccgcatggagcagattctgccatggcaaaacatggtggaagtcatcgagccgttttaccccaaggctggtaatggccggcgaccttatc < 1:224575‑M1/251‑235 (MQ=255) cacaGATTTGGCCTTAggaaggtgcgaacacgtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccg > 1:92243‑M1/1‑16 (MQ=255) gATTTGGCCTTAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatcgaccagggttcatcatgagtcatccacttaccttcgccgacagtgacttcagccgtaagcgccgtcagcccagacaagagattttct > 1:44105‑M1/1‑12 (MQ=255) ggCCTTAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgcgtcctcaact > 1:55597‑M1/1‑7 (MQ=255) ccTTAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcg > 1:18551‑M1/1‑5 (MQ=255) | CGTGCTTTCATCTATCGAACGCAAAAATCATTCTCTAAGTAAATGAATGGATTGCATGCGTTTCACTCAATTGTACTTTAATTGACCAACCCCGCTTATTAACTTTCTGTATCACTTTTTCTTATAAAAAATCATGTAAAACCGCTCGCCAAGACCGCACCAATCGGGTAATCTCGAACTCGTTTTGCCTCGGCGGTAGATTATCCTCACAGCATATAATTTTGTGCGTTAGTCCACAGATTTGGCCTTAAGGAATTGTTTCAACATGCCCAGGTAATTAGTCTCGTGTCGCTTGGCATTTTTTTATAACGATATTTGTCGTTAAGGACTTCAAGGGAAAACAAACAACATGGTCAAATCTCAACCGATTTTGAGATATATCTTGCGCGGGATTCCCGCGATTGCAGTAGCGGTTCTGCTTTCTGCATGTAGTGCAAATAACACCGCAAAGAATATGCATCCTGAGACACGTGCAGTGGGTAGT > NC_000913/2269630‑2270113 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |