New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1979271 =	0 (0.000)	14 (0.990)	13/310	0.1	100%	intergenic (‑56/‑482)	insA5/uspC	IS1 family protein InsA/universal stress protein C
	?	NC_000913	= 2102947	NA (NA)					pseudogene (443/446 nt)	wbbL	interrupted rhamnosyltransferase WbbL

CAACGCCATTCATGGCCATATCAATGATTTTCTGGTGCGTACCGGGTTGAGAAGCGGTGTAAGTGAACTGCAGTTGCCATGTTTTACGGCAGTGAGAGCAGAGATAGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACC  >  NC_000913/1979023‑1979445                                                                                                                                                                                                                                                         |                                                                                                                                                                               gtttccagcggataaggtcgccggccattaccagccttggggtaaaacgtctcgatcacttccaccatgttttgccatggcagaatcttctccatgcgggacaagaaaagctcgtttctgggctgacggcgcgtactgcggaattcactttcggcgaagggaagttgatgactcatgattaacgttgttgtatggctccagatgacaaacatgttcgcatatcagggacttgttcgcaccttccttaaCAt                                                                                                                                                                              >  1:128819‑M1/249‑251 (MQ=255)                    gccggccattaccagccttggggtaaaacggctcgatgacttccaccatgttttgccatggcagaatctgctccatgcgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccttaaCATAAATGTATAAGTCATACtt                                                                                                                                                           <  1:129705‑M1/22‑1 (MQ=255)                         ccattaccagccttggggtaaaacggctcgatgacttccaccatgttttgccatggcagaatctgctccatgcgggacaagcaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccttaaCATAAATGTATAAGTCATACttttgtt                                                                                                                                                      <  1:100155‑M1/27‑1 (MQ=255)                                                                           ccntggnannanntgcnccatgcgggacaagaaaatctnntttctggtcngacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgntgaaccctgnnctntggcgncnnntnnnaancatgatctcatatcaggganttnntcgcacnttccttaaCATAAATGTATAAgtcgt                                                                                                                                                               >  2:72748‑M1/175‑190 (MQ=255)                                                                             atggcataatcggctccatgagggacaagaaaatctcttttcgggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagtttatgactcatgatgatccctgttctatggctccaaattacaaacatgatctactatcagggacttgttcgctccttccttaaCATAAATGTATAATTCATACTTTTTTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTATCAAGCaaaa                                                                                                  >  1:327352‑M1/173‑251 (MQ=255)                                                                                            ccatgcgggacaagaaaatctcttttctggtctgccggcgcttactgctgaattcactgtcggcgaaggtaagttgctgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGaata                                                                                    <  1:77662‑M1/93‑1 (MQ=255)                                                                                                gcgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctcccgatgacaaacatgatatcatatcagggacttgttcgcacattccttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTc                                                                                                                     <  1:209413‑M1/60‑1 (MQ=255)                                                                                                                                  cgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgctctcatatcagggacttgttcgcaccttccttaaCATAAATGTATAAGTCATACTTTTGTTTTggg                                                                                                                                                 <  1:155379‑M1/32‑1 (MQ=255)                                                                                                                                               attcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAAGCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAatcatc                                >  1:445‑M1/107‑251 (MQ=255)                                                                                                                                                      gtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTa                                                                                                                                <  1:16994‑M1/49‑1 (MQ=255)                                                                                                                                                          gcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagctgacaaacatgatctcatctcagggacttgttcgcaccttccttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGAAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCAc                                              <  1:318106‑M1/131‑1 (MQ=255)                                                                                                                                                                            ctcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatccgggacttgttcgcaccttccttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGACATAATCGAAATGGGCTGTTGCGCACAGTCAAAATAACTCACCGTAaat                                       <  1:76023‑M1/138‑1 (MQ=255)                                                                                                                                                                                                   gcntcanannannaacntgatctcatatcagggacgtgnncgcacctgcnttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGGTANAAAGTTGTTNNCTNCGCTANCNNNCNNNAANGAAACAGGAATAATCGAAANGGNNTGTTGCNCACAGTCAAAATAACTCCCCGTAaat                                       >  2:76023‑M1/55‑192 (MQ=255)                                                                                                                                                                                                                                       ngtncgcntnntnntcancATAAATGTATAAGTCATACTNNTGTTTTGGGNGGATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACNGGAATAATCNNAANGGGAGNTNNNGNNNAGNCAAAATAACTCACCGTAAANAANNATCTGCNTTAAATAATCACTTTCATGCAATAcc  <  2:77662/175‑1 (MQ=255)                                                                                                                                                                                                                                           cgcaccttccttaaCATAAATGTATAAGTCATACTTGTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCGCCGGAAATAATCATCTGCTATAAATAATCACttt             >  1:130910‑M1/15‑178 (MQ=255)                                                                                                                                                                                                                                                         |                                                                                                                                                                               CAACGCCATTCATGGCCATATCAATGATTTTCTGGTGCGTACCGGGTTGAGAAGCGGTGTAAGTGAACTGCAGTTGCCATGTTTTACGGCAGTGAGAGCAGAGATAGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACC  >  NC_000913/1979023‑1979445

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.