New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1397238	NA (NA)	10 (0.700)	8/310	0.4	100%	noncoding (1195/1195 nt)	IS5	repeat region
	?	NC_000913	= 1978494	0 (0.000)					intergenic (‑297/+24)	flhD/insB5	DNA‑binding transcriptional dual regulator FlhD/IS1 family protein InsB

GTTGCTGAAAAACGATAACCAACTGGCGATGTTATTCACGCTGGCCAACCTGTTTCGGGCGGACCAAATGATACGTCAGTGGGAGAGATCTCACTAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACTGAAGTCAGCGAAAGGGAAGAAATTTCTCTTTGGTTTGTTGGCGGTTTTCATTATTGCGGCGTCGGTTGTGACTCGCGCGACCATCGGCGGCGTTATAGAAC  >  NC_000913/1396996‑1397482                                                                                                                                                                                                                                                   |                                                                                                                                                                                                                                                     gTTGCTGAAAAACGATAACCAACTGGCGATGTTATTCACGCTGGCAAACCTGTTTCGGGCGGACCAAATGATACGTCAGTGGGCGAGATCTCACTAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGATGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAACAATGAAGAAATGAAAAGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCctaacta                                                                                                                                                                                                                                               >  1:108127/1‑250 (MQ=255)                                                        cGGGCGGACCAAATGATACGTCAGTGGGAGAGATCTTGCTAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAAGCGTCTCAAAGATGAATAAATGAAATGACTGAGTCACCCGAGAAGAATTTCCCCGCTTATTCTCACCTTCCCTAACTAAGCAATGCGTTGATTGGAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAAc                                                                                                                                                                                        <  1:155089/250‑1 (MQ=17)                                                                                          ctcACTAAAAACTGGGGATAACGCCTTCAATAGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGAATTTACGGGAGAAAAAATCGGATAAAACATGAAGAAATGAAATTACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCATCTTCCCTAACTAATCCATGCGTTGATTGTAGATCCAGCTAAGAGGGGAGGTTTTCAGATCAGACAACGGTGAAATGTCATGGTATGGTTACGTTTAGGTacc                                                                                                                                                     >  1:315997/1‑249 (MQ=18)                                                                                                          gATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCTGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGc                                                                                                                                      >  1:143118/1‑250 (MQ=255)                                                                                                                                                  naTTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCaa                                                                                                                                                                                                                                          >  1:203913/2‑110 (MQ=38)                                                                                                                                                  gATTCANNGCATTTACGNGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAANAATTTCCCCNNTTNTTCGCNCNNNCNNNAANTAATCAATGCGTTGATTGTNAANNCAGCTANGAGGTGAGGTTTTCAGAGCAGACAAc                                                                                                                                                                                        <  2:75315/160‑1 (MQ=21)                                                                                                                                                  gATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCaa                                                                                                                                                                                                                                          <  2:203913/110‑1 (MQ=38)                                                                                                                                                  gATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAAc                                                                                                                                                                                        >  1:75315/1‑160 (MQ=255)                                                                                                                                                                               ggCTCAAACATGAAGAAATGAAATGACTGAGTCATCCGAGAAGAATTTCCCCGCTTATTCGCTCCGTCCCTAACTAATCAGTGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCATACAACGGTGAAAGGTCATgg                                                                                                                                                                         <  1:106022/146‑1 (MQ=25)                                                                                                                                                                                    aaaCATGAAGAAATGAAATTACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGGTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTGACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTTCAGCATGATTATGGCGAAACTGAAGTCAGCGAAAGGGAAGAAATTTCTCTTTGGTTTGTTGGCgg                                                           <  1:239251/251‑1 (MQ=255)                                                                                                                                                                                                            aGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATGGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAATGATTACATCATGATTAGGGCGAAACTGAAGTCAGCGAAAGGGAAGAAATTTCGCGGTGGTTTTTTGGCTGGTTTCATTATTGCGGCGTCGGTtg                                   <  1:124456/251‑1 (MQ=255)                                                                                                                                                                                                            aGTCAGCCGAGAAGAATTTCCCCGCGTATTCGCGCCTTCCCTAACTAATCAATGCGTTGATTGTAAATACAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACTGAAGTCAGCGAAAGGGAAGAAATTTCTCTTTGGTTTGTTGGCGGTTTTCATTATTGCGGCGTCGGTtg                                   <  1:245207/251‑1 (MQ=255)                                                                                                                                                                                                             gTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGCTTTCAGAGCAGACAACGGTGACATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACTGAAGTCAGCGAAAGGGAAGAAATTTCTCTTTGGTTTGTTGGTGGTTTTCATTATTGCGGCGTCGGTtgt                                  >  1:77008/1‑251 (MQ=255)                                                                                                                                                                                                               cAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACTGAAGTCAGCGAAAGGGAAGAAATTTCTCTTTGGTTTGTTGGCGGTTTTCATTATTGCGGCGTCGGTtgtg                                 >  1:275523/1‑250 (MQ=255)                                                                                                                                                                                                                                cccGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACTGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACTGAACTCAGCGAAAGGGAAGAAATTTCTCTTTGGTTTGTTGGCGGt                                                          <  1:151792/208‑1 (MQ=255)                                                                                                                                                                                                                                cccGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTGTCAGAGCAGACAACGGTGTAATGTCATGGTATTGTTACGTTTAGGGAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACTGAAGTCAGCGAAAGGGAAGAAATTTCTCTTTGGTTTGTTGGCGGTTTTCATTATGGCGGCGTCGGTTGTGAc                               <  1:92998/235‑1 (MQ=255)                                                                                                                                                                                                                                             cccTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGTTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATGATGGCGAAACTGAAGTCAGCTAAATGGAAGAAATTTCTCTTTGGGTTGTTGGCGGTTTTCATTATTGCGGCGTCGGTTGTGACTCGCGCGACCATCGGCGGCTTTATAGAAc  <  1:265183/250‑1 (MQ=255)                                                                                                                                                                                                                                                   |                                                                                                                                                                                                                                                     GTTGCTGAAAAACGATAACCAACTGGCGATGTTATTCACGCTGGCCAACCTGTTTCGGGCGGACCAAATGATACGTCAGTGGGAGAGATCTCACTAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACTGAAGTCAGCGAAAGGGAAGAAATTTCTCTTTGGTTTGTTGGCGGTTTTCATTATTGCGGCGTCGGTTGTGACTCGCGCGACCATCGGCGGCGTTATAGAAC  >  NC_000913/1396996‑1397482

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.