| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 878,329 | Δ29,995 bp | [bssR]–[ltaE] | 36 genes [bssR], yliI, gstB, dacC, deoR, ybjG, mdfA, ybjH, ybjI, ybjJ, rcdA, rybB, ybjL, ybjM, grxA, ybjC, nfsA, rimK, ybjN, potF, potG, potH, potI, ybjO, rlmC, artJ, artM, artQ, artI, artP, ybjP, ybjQ, amiD, ybjS, ybjT, [ltaE] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 878329 | 908323 | 29995 | 10 [0] | [0] 10 | [bssR]–[ltaE] | [bssR],yliI,gstB,dacC,deoR,ybjG,mdfA,ybjH,ybjI,ybjJ,rcdA,rybB,ybjL,ybjM,grxA,ybjC,nfsA,rimK,ybjN,potF,potG,potH,potI,ybjO,rlmC,artJ,artM,artQ,artI,artP,ybjP,ybjQ,amiD,ybjS,ybjT,[ltaE] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 878328 | 0 (0.000) | 10 (0.710) | 8/308 | 0.3 | 100% | coding (81/384 nt) | bssR | regulator of biofilm formation |
| ? | NC_000913 | 908324 = | 0 (0.000) | coding (971/1002 nt) | ltaE | low‑specificity L‑threonine aldolase | |||||
GTTCTGGATAAAATTTGTATCGCAATCTCATTCGCTGGCGGAGGCGAAGGAAATGTAAATTTTGTTAATTCGGCGTGAAGAATTGATCCTGGACAGCATTTTGCTCAAAAAATAGCCATACTATTTAATTGCAACAAGGCTGGGAAGAGGAGGATCGAAGTATGTTCGTTGACAGACAGCGAATCGATCTGCTGAACCGGTTGATCGACGCACGCGTTGACCTCGCCGCATACGTGCAACTGAGGAAGGCAAAAGGATACATGTCCGTCAGCGAAAGCAATCATCTACGAGATAACTTTTTTAAACTGAATCGCGAACTGCACGATAAATCGCTGCGGTTGAATCTTCATCTGGATCAGGAAGAGTGGAGTGCTCTTCATCATGCTGAAGAAGCATTAGCGACAGCCGCAGTATGTTTGATGAGTGGGCACCATGATTGCCCGACTGTTATTACCGTCAA > NC_000913/878087‑878546 | gTTCTGGATAAAATTTGTATCGCAATCTCATTCGCTGGCGGAGGCGAAGGAAATGTAACTTTTGTTAATTCGGCGTGAAGAATTGATCCTGGACAGCATTTTGCTCAAACAATAGCCATACTATTTAATTGCAACAAGGCTGGGAAGAGGAGGAACGAAGTATGTTCGTTGACAGACAGCGAATCGATCTGCTGAACCGGTTGATCGACGCACGCGTTGACCTCGCCGCATACGTGCAACTGgcgacttcc > 1:308559‑M1/1‑242 (MQ=255) cGGCGTGAAGAATTGATCCTGGACAGCATTTTGCTCAAAAAATAGCCATACTATTTAATTGCAACAAGGCTGGGAAGAGGAGGATCGAAGTATGTTCGTTGACAGACAGCGAATCGATCTGCTGAACCGGTTGATCGACGCACGCGTTGACCTCGCCGCATACGTGCAACTGgcgacttccgccagttgttcgcgcgagacgtcaagatgcgtcaccaggcggacaatcggcgaggcgttaatcagcacgn < 1:27927‑M1/251‑80 (MQ=255) aTTGATCCTGGCCAGAATTTTGCTCAAAAAATAGCCCTACTATTTAATTGCAACAAGGCTGGGAAGAGGAGGATCGAAGTATGTTCGTTGACAGACAGCGAATCGATCTGCTGAACCGGTTGATCGACGCACGCGTTGACCTCGCCGCATACGTGCAACTGgcgacttccgccagttgttcgcgcgagacgtcaagatgcgtcaccaggcggacaatcggcgaggcgttaatcagcacgtttctcgctttc > 1:115149‑M1/1‑161 (MQ=255) cAGCATTTTGCTCAAAAAATAGCCATACTATTTAATTGCAACAAGGCTGGGAAGAGGAGGATCGAAGTATGTTCGTTGACAGACAGCGAATCGATCTGCTGAACCGGTTGATCGACGCACGCGTTGACCTCGCCGCATACGTGCAACTGgcgacttccgccagttgttcgcgcgagacgtcaagatgcgtcaccaggcggacaatcggcgaggcgttaatca > 1:109149‑M1/1‑149 (MQ=255) caaGGCTGGGAAGAGGAGGATCGAAGTATGGTCGTTGACAGACAGCGAATCGATCTGCTGAACCGGTTGATCGACGCACGCGTTGACCTCGCCGCATACGTGCAACTGgcgacttccgccaggtgttcgcgcgagacggcaagatgcgtcaccaggcggacaagcggcgaggcgttaatcagcacgtgtctcgctttcatgtattcgcctaacgcggcagcattttc < 1:53606‑M1/227‑120 (MQ=255) agCGAATCGATCTGCTGAACCGGATGATCGACGCACGCGTTGACCTCGCAGCCTACGAGCAACTGgcgacttcagccagttgttcgcgcgagacgtcaagatgcgtcacaaggcggccactcgcagaggcgttaatcagcacgcttcttgctttcatgtattcgcctaacgcggcagcattttcttccccgacgcgaacaaacagcatattggtgtcctgacgcatcacatc > 1:320824‑M1/1‑65 (MQ=255) ncacgcgTTGACCTCGCCGCATACGTGCAACTGgcgacttccgccagttgttcgcgcgagacgccaagatgcgtcaccaggcggacaatcggcgaggcgttaatcagcacgcttctcgctttcatgtattcgcctaacgcggcagcattttcttccccgacgcgaacaaacagcatattggtgtcctgacgcatcacatccgcgcctgcttcacgcagctgctcctccatccaggcagcgttgtcgtggtc > 1:32381‑M1/2‑33 (MQ=255) cgcgTTGACCTCGCCGCATACGTGCAACTGgcgacttccgccagttgttcgcgcgagacgtcaagatgcgtcaccaggcggacaatcggcgaggcgttaatcagcacgtttctcgctttcatgtcttcgcctaacgcggcagcattttcttccccgacgcgaacaaacagcatattggtgtcctgacg > 1:76567‑M1/1‑30 (MQ=255) cGTGCAACTGgcggcttccgccagttgttcgcgcgagacgtcaagatgcgtcaccaggcggacaatcggcgaggcgttaatcagcacgtttctcgctttcatgtattcgcctaacgcggcagcattttcttcc > 1:86311‑M1/1‑10 (MQ=255) cAACTGgcgacttccgccagttgttcgcgcgagacgtcaagatgcgtcaccaggcggaccatcggagaggcgttaatcagcacctttatcgctttcatgtattcgcctaacgcggcagccttttcttccccgacgcgaacaaaaagcatattggtgtcctgacgcatcacatccgcgcctgcttcacgcagctgctccgccatcccgg > 1:318953‑M1/1‑6 (MQ=255) | GTTCTGGATAAAATTTGTATCGCAATCTCATTCGCTGGCGGAGGCGAAGGAAATGTAAATTTTGTTAATTCGGCGTGAAGAATTGATCCTGGACAGCATTTTGCTCAAAAAATAGCCATACTATTTAATTGCAACAAGGCTGGGAAGAGGAGGATCGAAGTATGTTCGTTGACAGACAGCGAATCGATCTGCTGAACCGGTTGATCGACGCACGCGTTGACCTCGCCGCATACGTGCAACTGAGGAAGGCAAAAGGATACATGTCCGTCAGCGAAAGCAATCATCTACGAGATAACTTTTTTAAACTGAATCGCGAACTGCACGATAAATCGCTGCGGTTGAATCTTCATCTGGATCAGGAAGAGTGGAGTGCTCTTCATCATGCTGAAGAAGCATTAGCGACAGCCGCAGTATGTTTGATGAGTGGGCACCATGATTGCCCGACTGTTATTACCGTCAA > NC_000913/878087‑878546 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |