Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,744,751 Δ1 bp coding (1295/1374 nt) mdtK → multidrug efflux pump MdtK

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,744,7510C.100.0% 42.6 / NA 12coding (1295/1374 nt)mdtKmultidrug efflux pump MdtK
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base . (7/5);  total (7/5)

TGATGTTGCTGGCGGCGGTATATCAGATTTCTGACTCAATCCAGGTGATTGGCAGTGGGATTTTGCGTGGTTATAAAGATACGCGTTCCATTTTCTATATTACCTTTACGGCTTACTGGGTGCTGGGCTTGCCAAGCGGCTATATTCTGGCACTGACCGATCTGGTCGTTGAACCTATGGGGCCAGCAGGCTTCTGGATAGGCTTTATTATTGGCCTGACGTCGGCAGCCATTATGATGATGTTGCGTATGCGGTTCCTGCAACGTCTGCCGTCAGCCATCATTCTGCAACGAGCATCCCGCTAATAAAGACAAGGCGCAACCTTCACGGGTTGCGCCTGTATTTTTACGCAGGCTGGAGCGTTGCGCCAATCCCGTCTTCGTCTGGCTGTAATTTCAGAGCGTTACACAGAGTTTGCCGACTGG  >  NC_000913/1744526‑1744950
                                                                                                                                                                                                                                 |                                                                                                                                                                                                       
tGATGTTGCTGGGGGCGGTATATCAGATTTCTGACTCAATCCAGGTTATTGGCAGGGGGATTTTGCGTGGGTAGAAAGATACGCGTTCCATTTTCTATAATACCTTTACGGCTTGCTGGGTGCTGGGTGTGCCAAGCGGCTATATTCTGGGTCTGACCGATCTGGTCGGTGAACCTATGGGGCCAGCAGGCTTCTGGATAGGCTTTATTATTTGCCTGACGTCGG‑AGCCATTATGATGATGTTGCGTATg                                                                                                                                                                                <  1:134503/250‑1 (MQ=255)
                               tGACTCAATCCAGGTGATTGGCAGTGGGATTTTGCGTGGTTATAAAGATACGCGTTCCCTTTTCTCTATTCCCTTTACGGCTTACTGGGTGCTAGGCTTACCAAGCGGCTATATTCTGGCCCTGCCCGATCTGGTCGTTGAACCTATGGGGCCAGCAGGCTTCTGGCTAGGCTTTATTTTTGGCCTGACGTCGG‑AGCCATTATGATGATGTTGCGTATGCGGTTCCTGCAACGTCTGCCGTCCGCcatcat                                                                                                                                                >  1:168389/1‑251 (MQ=255)
                                                                                       ccagtttCTATATTACTTTTACGGCTTGCGGGGTGCTGGGCTTTCCAAGCGGTTATATTCTGGCACTGTGCGATCTGGTCGTTGAACCTATGGGGCCAGCAGGCTGCTGGATAGGTGTTATTATTGGCCTGACGTCTG‑AGTGATTATGATGATGTTGCGTATGCGGTTCCTGCaa                                                                                                                                                                    <  1:128720/171‑1 (MQ=255)
                                                                                       ccATTTTCTATATTACCTTTACGGCTTACTGGGTGCTGGGCTTGCCAAGCGGCTATATTCTGGCACTGACCGATCTGGTCGTTGACCCTATGGGGCCAGCAGGCTTCTGGATAGGCTTTATTATTGGCCTGACGTCGG‑AGCCATTATGATGATGTTGCGTATGCGGTTCCTGCAACGTCTGCCGTCAGCCATCATTCTGCAACGAGCATCCCGCTAATAAAGACAAGGCGCAACCTTCACGGGTTGCGCCt                                                                                        >  1:177753/1‑251 (MQ=255)
                                                                                                       ttttACGGCTTACTGGGTGCTGGGCTTGCCAAGCGGCTATATTCTGGCACTGACCGATCTGGTCGTTGAACCTATGGGGCCAGCAGGCTTCTGGATAGGCTTGATTATTGGCCTGACGTCGG‑AGCCATTATGATGATGTTGCGTATGCGGTTGCTGCAACGTCTGCCGTTAGCCATCATTCTGCAACGAGCATCCCTCTAATAAAGACAATGCGCAACCTTCACGGGTTGCGCCTGTATTTTTACGCAgg                                                                         <  1:214113/249‑1 (MQ=255)
                                                                                                                             ggCTTGCCAAGCGGCTATATTCTGGCACTGACCGATCTGGTCGTTGAACCTATGGGGCCAGCAGGCTTCTGGATAGGCTTTATTATTGGCCTGACGTCGG‑AGCCATTATGATGATGTTGCGTATGCGGTTCCTGCAACGTCTGCCGTCAGCCATCATTCTGCAACGAGCATCCCGCTAATAACGACAAGGCGCAACCTTCACGGGTTGCGCCTGTATTTTTACGCAGGCTGGAGCGTTGCGCCAATCCCGt                                                  >  1:12333/1‑251 (MQ=255)
                                                                                                                                                   tGGCACTGACCGATCTGGTCGTTGAACCTATGGGGCCAGCAGGCTTCTGGATAGGCTTTATTATTGGCCTGACGTCGG‑AGCCATTATGATGATGTTGCGTATGCGGTTCCTGCAACGTCTGCCGTCAGCCATCATTCTGCAACGAGCATCCCGCTAATAAAGACAAGGCGCAACCTTCACGGGTTGCGCCTGTATTTTTACGCAGGCTGGAGCGTTGCGCCAATCCCGTCTTCGTCTg                                         <  1:17178/238‑1 (MQ=255)
                                                                                                                                                      naCTGACCGATCTGGTCGTTGAACCTATGGGGCCAGCAGGCTTCTGGATAGGCTTTATTATTGGCCTGACGTCGG‑AGCCATTATGATGATGTTGCGTATGCGGTTCCTGCAACGTCTGCCGTCAGCCATCATTCTGCAACGAGCATCCCGCTAATAAAGACAAGGCGCAACCTTCACGGGTTGCGcc                                                                                         >  1:192504/2‑187 (MQ=255)
                                                                                                                                                       aCTGACCGATCTGGTCGTTGAACCTATGGGGCCAGCAGGCTTCTGGATACGCTTTATCATTGCCCTGACGTCGG‑AGCCATTATGATGATGTTGCGTATGCGGTTCCTGCAACGTCTGCCGTCAGCCATCATTCTGCAACGAGCATCCCGCTAATAAAGACa                                                                                                                  >  1:146895/1‑161 (MQ=255)
                                                                                                                                                            ncGATCTGGTCGTTGAACCTATGGGGCCAGCAGGCTTCTGGATAGGCTTTATTATTGGCCTGACGTCGG‑AGCCATTATGATGATGTTGCGTATGCGGTTCCTGCAACGTCTGCCGTCAGCCATCATTCTGCAACGAGCATCCCGCTAATAAAGACAAGGCGCAACCTTCACGGGTTGCGCCTGTATTTTTACGCAGGCTGGAGCGTTGCGCCAATCCCGTCTTCGTCTGGCTGTAATTTCAGAGCGTTac                    >  1:202590/2‑250 (MQ=255)
                                                                                                                                                                                   gggCCAGCAGGCTTCTGGATAGGCTTTATTATTGGCCTGACGTCGG‑AGCCATTATAATGATGTTGCGTATGCGGTTCCTGCAACGTCTGCCGTCAGCCATCATTCTGCAACGAGCATCCAGCTAATAAAGACAAGGCGCAACCTTCACGGGTTGCGCCTGTATTTTTACGCAGGCTGGAGCGTTGCGCCAATCCCGTCTTCGTCTGGCTGTAATTTCAGCGCGTTACACAGAGTTTGCCGACTgg  >  1:233265/1‑245 (MQ=255)
                                                                                                                                                                                       nnnnnnnnnncTNNNNNGGCNTTATTATTGGCCTGACGTCGG‑AGCCATTATGATGATGTTGCGTATGCGGTTCCTGCAACGTCTGCCGTCAGCCATCATTCTGCAACGAGCATCCCGCTAATAAAGACAAGGCGCAACCGTCACGGGTTGCGcc                                                                                         <  2:192504/144‑1 (MQ=255)
                                                                                                                                                                                                                                 |                                                                                                                                                                                                       
TGATGTTGCTGGCGGCGGTATATCAGATTTCTGACTCAATCCAGGTGATTGGCAGTGGGATTTTGCGTGGTTATAAAGATACGCGTTCCATTTTCTATATTACCTTTACGGCTTACTGGGTGCTGGGCTTGCCAAGCGGCTATATTCTGGCACTGACCGATCTGGTCGTTGAACCTATGGGGCCAGCAGGCTTCTGGATAGGCTTTATTATTGGCCTGACGTCGGCAGCCATTATGATGATGTTGCGTATGCGGTTCCTGCAACGTCTGCCGTCAGCCATCATTCTGCAACGAGCATCCCGCTAATAAAGACAAGGCGCAACCTTCACGGGTTGCGCCTGTATTTTTACGCAGGCTGGAGCGTTGCGCCAATCCCGTCTTCGTCTGGCTGTAATTTCAGAGCGTTACACAGAGTTTGCCGACTGG  >  NC_000913/1744526‑1744950

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑