| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,771,933 | C→T | A288V (GCT→GTT) | ydiM → | putative exporter YdiM |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,771,933 | 0 | C | T | 90.0% | 17.2 / ‑5.5 | 10 | A288V (GCT→GTT) | ydiM | putative exporter YdiM |
| Reads supporting (aligned to +/- strand): ref base C (0/0); major base T (3/6); minor base A (1/0); total (4/6) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.00e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
TGGCTATATCTCAATGGCAACGTTTTATCTGGTTAGCCAGTGGCTGGCACAGTACGGACAATTTGTTGCAGGCATGTCATACACTATGTCGATCAAACTACTCAGTATCTACACCGTGGGTTCGCTGCTTTGTGTATTTATTACCGCTCCACTCATTCGTAATACCGTTCGCCCAACAACATTACTGATGCTGTACACCTTTATCTCATTTATTGCTCTGTTTACCGTCTGCCTGCATCCCACATTTTATGTGGTGATAATATTTGCTTTTGTCATTGGTTTTACCTCTGCTGGAGGTGTTGTGCAAATTGGCCTGACGTTAATGGCTGAACGTTTCCCTTACGCTAAAGGTAAAGCTACAGGGATCTATTACAGTGCGGGCAGTATTGCGACCTTTACTATTCCGTTGATTACGGCTCATCTGTCCCAAAGAAGTATTGCCGATATTATGTGGTTC > NC_000913/1771718‑1772174 | tGGCTATATCTCAATGGCAACGTTTTATCTGGTTAGCCAGTGGCTGGCACAGTACGGACAATTTGTTGCAGGCATGTCATACACTATGTCGATCAAACTACTCAGTATCTACACCGTGGGTTCGCTGCTTTGTGTATTTATTACCGCTCCACTCATTCGTAATACCGTTCGCCCAACAACATTACTGATGCTGTACACCTTTATCTCATTTATTGTTCTGTTTan < 1:63674/225‑2 (MQ=255) cGTTTTATCTGGTCAGCCAGTGGCTGGCACAGTACGGACAATTTGTTGCATCCATGTCATACACTATGTCGATCAAAATCCTCAGCATCTACCACGTGGGTTCGCTGCTTTCTGTATTTATTACCGCTCCACTCATTCGTAATAACGTTCGCCCAACAACACTACTGATGCTGTACACCTTTATCTCATTTATTGTTCTGTTTACCGTCTGCATGCATCCCACATTTTATGTGGTGATAATATTTGCtttt > 1:139908/1‑251 (MQ=255) aTCTACACCGTGGGTTCGCTGCTTTGTGTATTTATTACCGCTCCACTCATTCGTAATACCGTTCGCCCAACAACATTACTGATGCTGTACACCTTTATCTCATTTATTGTTCTGTTTACCGTCTGCCTGCATCCCACATTTTATGTGGTGATAATATTTGCTTTTGTCATTGGTTTTTCCTCTGCTGGAGGTGTTGTGCAAATTGGCCTGACGTTAATGGCTGAACGTTTCCCTTACGCTAAAGGTAAAg < 1:1397/250‑1 (MQ=255) atttattACCGCTCCACTCATTCGTAATACCGTTCGCCCAACAACATTACTGATGCTGTACACCTTTATCTCATTTATTGTTCTGTTTACCGTCTGCCTGCATCCCACATTTTATGTGGTGATAATATTTGCTTTTGTCATTGGTTTTAcc < 1:17390/151‑1 (MQ=255) ncGCTCCAATCATTCGTAATACCGTTCGCCCAACAACATTACTGATGCTGTACACCTTTATCTCATTTATTGTTCTGTTTACCGTCTGCCTGCATCCCACATTTTATGTGGTGATAATATTTGCTTTTGTCATTGGTTTTACCTCTGCTGGAGGTGTTGTGCAAATTGGCCTGACGTTAATGGCTGAACGTTTCCCTTACGCTaa > 1:175565/2‑205 (MQ=255) gTAATACCGTTCGCCCAACAACATTACTGATGCTGTACACCTTTATCTCATTTATTGTTCTGTTTACCGTCTTCCTGCATCCCACATTTTATGTGGTGATAATATTTGCTTTTGTCATTGGtttn < 1:21166/125‑2 (MQ=255) tACCGTTCGCCCAACAACATGACTGATGCGGTACACCTTTATCTCATTTAGTGTTCTGTTTACCGTCTGCCTGCATCCCACATTTTATATGGTGATAATATTTGCTTTTGTCATTGGTTTTACCTCTGCTGGAGGTGTTGTGCAAATTGGcc < 1:163751/152‑1 (MQ=255) tACCGNNCGNNNAANNACATTACTGATGCTGTACACCTTNATCTCATTTATTGATCTGTTTACCGTCTGNCNGNATCCNNCATNTTATGTGGTGNTAATATTTGCTTTTGTCATTGGTTTTACCTCTGCTGGAGGTGTTGTGCNANTTGGcc > 2:163751/1‑152 (MQ=255) cccAACAACATTACTGATGCTGTACACCTTTATCTCATTTATTGTTCTGTTTACCGTCTGCCTGCATCCCACATTTTATGTGGTGATAATATTTGCTTTTGTCATTGGTTTTACCTCTGCTGGAGGTGTTGTGCAAATTGGCCTGACGTTAATGGCTGAACGTTTCCCTTACGCTAAAGGTAAAGCTACAGGGATCTATTACAGTGCGGGCAGTATTGCGACCTTTACTATTCCGTTGATTACGGCTCATc < 1:215703/251‑1 (MQ=255) cATTTATTGTTCTGTTTACCGTCTACCTGCATTCCCCATCTTATGTGGGGATAATATTTGCTTTTGTCCTTGGTTTTACCTCTGCTGGAGGTGTTGTGCAAATTGGCCTGACGTTACTGGCTGAACGTTTCCCTTACGCTAAAGGTAAAGCTACAGGGATCTATTACAGTGCGGGCAGTATTGCGACCTTTACTATTCCGTTGATTACGGCTCATCTGTCCCAAAGAAGTATTGCCGATCTTATATGGttt > 1:79490/1‑250 (MQ=255) | TGGCTATATCTCAATGGCAACGTTTTATCTGGTTAGCCAGTGGCTGGCACAGTACGGACAATTTGTTGCAGGCATGTCATACACTATGTCGATCAAACTACTCAGTATCTACACCGTGGGTTCGCTGCTTTGTGTATTTATTACCGCTCCACTCATTCGTAATACCGTTCGCCCAACAACATTACTGATGCTGTACACCTTTATCTCATTTATTGCTCTGTTTACCGTCTGCCTGCATCCCACATTTTATGTGGTGATAATATTTGCTTTTGTCATTGGTTTTACCTCTGCTGGAGGTGTTGTGCAAATTGGCCTGACGTTAATGGCTGAACGTTTCCCTTACGCTAAAGGTAAAGCTACAGGGATCTATTACAGTGCGGGCAGTATTGCGACCTTTACTATTCCGTTGATTACGGCTCATCTGTCCCAAAGAAGTATTGCCGATATTATGTGGTTC > NC_000913/1771718‑1772174 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |