| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,560,104 | C→T | G276S (GGC→AGC) | ddpB ← | putative D,D‑dipeptide ABC transporter membrane subunit DdpB |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,560,104 | 0 | C | T | 85.7% | 10.0 / ‑5.9 | 7 | G276S (GGC→AGC) | ddpB | putative D,D‑dipeptide ABC transporter membrane subunit DdpB |
| Reads supporting (aligned to +/- strand): ref base C (0/0); major base T (4/2); minor base A (1/0); total (5/2) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.53e-01 | |||||||||||
GGGCGTACGGCGGACGTTTCCTCGCTTAGCATCATTCACCACCTCCACGTCCGATACGCGGATCAATCCACAAATAGAGCAAATCCACCACCAGGTTGACCAGCACATAAGCAAATGAAACCACGACGGCAAAGCCCATCACTGCCGGGAAGTCGAGCGCCTGTATTGATGTTACTACCCATGCACCCATTCCGGGCCAGGCAAAAACGGTTTCGGTGAGCACTGCGCCATACAACAAATCGCCCAGCGCCAAACCCAATACGGTAATCGATGGGATCAACGCATTGGGTAGCGCATAACATAAAACGATATACCAGCCGGGCAAGCCGCTGGCCCGGGCGGTACGAATGTAGTCTTCACTCAATTGTTCCAGCATCGCTGAGCGGATCTGGCGAGCGACAATTCCCAGGTGAACGAACGCCAGCGTTAATGCCGGTAAGATGAGATGTTGC > NC_000913/1559876‑1560327 | gggCGTACGGCGGACGTTTCCTCGCTTAGCATCATTCACCACCTCCACGTCCGATACGCGGATCAATCCACCAATAGAGAAAATCCACCACCAGGTTGACCAGCACATAAGCAACTGAAACCACGACGGCCAAGCCCATCACTCCCGGGAAGTCGAGCGCCTGTATTGATGTTACTACCAATGCACCCATTCCGGGCCAGGCAAAAACGGTTTCGGTGCGCACTGAGCAATACAACAAATCGCCCAGCGcc > 1:35369/1‑251 (MQ=255) cAATCCACAAATAGAGCAAATCCACCACCAGGTTGACCAGCACATAAGCAAATGAAACCACGACGGCAAAGCCCATCACTGCCGGGAAGTCGAGCGCCTGTATTGATGTTACTACCCATGCACCCATTCCGGGCCAGGCAAAAACGGTTTCGGTGAGCACTGCGCTATACAACAAATCGCCCAGCGCCAAACCCAATACGGTAATCGATGGGATCAACGCATTGGGTAGCGCATAACATAAAACGATATAc > 1:17040/1‑251 (MQ=255) gCAAATCCACCACCAGGTTGACCAGCACATAAGCAAATGAAACCACGACGGCAAAGCCCATCACTGCCGGGAAGTCGAGCGCCTGTATTGATGTTACTACCCATGCACCCATTCCGGGCCAGGCAAAAACGGTTTCGGTGAGCACTGCGCTATACAACAAATCGCCCAGCGCCAAACCCAATACGGTAATCGATGGGATCAACGCATTGGGTAGCGCATAACATAAAACGATATACCAGCCGGGCAAGCCg > 1:223679/1‑251 (MQ=255) tNCACCACCAGGTTGACCAGCACATAAGCAAATGAAACCACGACGGCAAAGCCCATCACTGCCGGGAAGTCGAGCGCCTGTATTGATGTTACTACCCATGCACCCATTCCGGGCCAGGCAAAAACGGTTTCGGTGAGCACTGCGCTATacaac > 1:170333/1‑153 (MQ=255) aaGCAAATGAAACCACGACGGCAAAGCCCATCACTGCCGGGAAGTCGAGCGCCTGTATTGATGTTACTACCCATGCACCCATTCCGGGCCAGGCAAAAACGGTTTCGGTGAGCACTGCGCTATACAACAAATCGCCCAGCGCCAAACCCAATTCGGTAATCGATGGGATCAACGCATTGGGTAGCGCATAACATAAAACGATATACCAGCCGGGCAAGCCGCTGGCCCAGGCTGTACGAATGTAttcttc < 1:167533/250‑1 (MQ=255) ggCAAAGCCCATCACTGCCGGGAAGTCGAGCGCCTGTATTGATGTTACTACCCATGCACCCATTCCGGGCCAGGCAAAAACGGTTTCGGTGAGCACTGCGCTATACAACAAATCGCCCAgcgn < 1:175421/123‑2 (MQ=255) cAAAAACGGTTTCGGTGAGCACTGCGCTATACAACAAATCGCCCAGCGCCAAACCCAATACGGTAATCGATGGGATCAACGCATTGGGTAGCGCATAACATAAAACGATATACCAGCCGGGCAAGCCGCTGGCCCGGGCGGTACGAATGTAGTCTTCACTCAATTGTTCCAGCATCGCTGAGCGGATCTGGCGAGCGACAATTCCCAGGTGAACGAACGCCAGCGTTAATGCCGGTAAGATGAGATGTTGc > 1:215771/1‑251 (MQ=255) nccATACAACAAATCGCCCAGCGCCAAACCCAATACGGTAATCGATGGGATCAACGCATTGGGTAGCGCATAACATAAAACGATATACCAGCCGGGCAAGCCGCTGGCCCGGGCGGTACGAATGTAGTCTTCACTCAATTGTTCCAGCATCGCTGAGCGGATCTGGCGAGCGACAATTCCCAGGTGAACGAACGCCAGCGTTAATGCCGGTAAGATGAGATGTTg > 1:136973/2‑225 (MQ=255) | GGGCGTACGGCGGACGTTTCCTCGCTTAGCATCATTCACCACCTCCACGTCCGATACGCGGATCAATCCACAAATAGAGCAAATCCACCACCAGGTTGACCAGCACATAAGCAAATGAAACCACGACGGCAAAGCCCATCACTGCCGGGAAGTCGAGCGCCTGTATTGATGTTACTACCCATGCACCCATTCCGGGCCAGGCAAAAACGGTTTCGGTGAGCACTGCGCCATACAACAAATCGCCCAGCGCCAAACCCAATACGGTAATCGATGGGATCAACGCATTGGGTAGCGCATAACATAAAACGATATACCAGCCGGGCAAGCCGCTGGCCCGGGCGGTACGAATGTAGTCTTCACTCAATTGTTCCAGCATCGCTGAGCGGATCTGGCGAGCGACAATTCCCAGGTGAACGAACGCCAGCGTTAATGCCGGTAAGATGAGATGTTGC > NC_000913/1559876‑1560327 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |