| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,499,175 | G→A | G80S (GGC→AGC) | rimL → | ribosomal‑protein‑L12‑serine N‑acetyltransferase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,499,175 | 0 | G | A | 90.9% | 26.9 / NA | 11 | G80S (GGC→AGC) | rimL | ribosomal‑protein‑L12‑serine N‑acetyltransferase |
| Reads supporting (aligned to +/- strand): ref base G (0/0); major base A (3/7); minor base C (1/0); total (4/7) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.64e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GAAACGATAAAAGTAAGCGAATCACTTGAATTACATGCTGTTGCAGAAAATCACGTCAAACCTCTTTATCAGTTAATCTGTAAAAATAAAACCTGGTTACAGCAGTCGCTAAACTGGCCGCAGTTTGTTCAAAGTGAAGAGGACACGCGAAAAACGGTGCAGGGTAATGTGATGTTGCATCAACGCGGCTATGCCAAAATGTTCATGATTTTCAAAGAAGATGAACTTATCGGCGTTATCTCGTTTAATCGTATTGAACCACTGAATAAAACCGCTGAAATAGGCTACTGGCTGGACGAATCTCATCAGGGGCAGGGGATCATTTCTCAGGCGCTGCAGGCATTGATTCATCATTACGCCCAGTCTGGTGAACTTAGACGCTTCGTGATCAAATGTCGGGTGGACAATCCGCAAAGCAACCAGGTCGCTTTGCG > NC_000913/1498944‑1499377 | gAAACGATAAAAGTAAGCGAATCACTTGAATTACATGCTGTTGCAGAAAATCACGTCAAACCTCTTTATCAGTTAATCTGTAAAAATAAAACCTGGTTACAGCAGTCGCTAAACTGGCCGCAGTTTGTTCAAAGTGAAGAGGACACGCGAAAAACGGTGCAGGGTAATGTGATGTTGCATCAACGCGGCTATGCCAAAATGTTCATGATTTTCAAAGAAGATGAACTTATCAGCg < 1:11116/235‑1 (MQ=255) cATGCTGTTGCAGAAAATCACGTCAAACCTCGTTATCATGTAATTGGGAAAAATAAAACCTGGTTACAGCATTCGCTAAACGGGCCGCAGTTTGTGCAAAGTGAAGAGGACACGCGAAAAACGGTGCAGTGTAATGTGATGTGGCATCAACGCGGCTATGCCAAATTGTTCAGTATTTTAAAAGAAGAGTATCGTATCATCGTTATCTCGTTTAATCGTATGGAACCACTGAATAAAACCGATGAAATAgg < 1:198544/251‑1 (MQ=255) gTAAAAATAAAACCTGGTTACAGCAGTCGCTAAACTGGCCGCAGTTTGTTCAAAGTGAAGAGGACACGCGAAAAACGGTGCAGGGTAATGTGATGTTGCATCAACGCGGCTATGCCAAAATGTTCATGATTTTCAAAGAAGATGAACTTATCAGCGTTATCTCGTTTAATCGTATTGAACCACTGAATAAAACCGCTGAAATAGGCTACTGGCTGGACGAATCTCATCAGGGGCAGGGGATCATTtc < 1:7841/247‑1 (MQ=255) gCTAAACTGGCCGCAGTTTGTTCAAAGTGAAGAGGACACGCGCAAAACGGTGAAGGGTCATGTGATGTTGCATCAACGCGGCTATGCCAACATGTTCATGATTTTCAAAGAAGATGAACTTATCAGCGTTATCTCGTTTAATCGTATTGAAcc > 1:31777/1‑153 (MQ=255) aCTGGCCGCAGTTTGTTCAAAGTGAAGAGGACACGCGAAACACGGTGCAGGCAAATGTGATGTTGAATCAACGCGGCTATGCCAAAATGTTCATGATTTTCAAAGAAGATGACCTTCTCAGCGTTATCTCGTTTAATCGTATTGAACCACTGAATAAAACCGCTGAAATAGGCTACTGGCTGGACGAATCTCATCAGGGGCAGGGGATCATTTCTCCGGCGCTGCAGGCATTGATTCATAATTACGccc > 1:140705/1‑249 (MQ=255) cAAAGTGAAGAGGACACGCGAACAACGGTGCAGGGTAATGTGATGTTGCATCAACGCGGCTATGCCAAAATGTTCATGATTTTCAAAGAAGATGAACTTCTCCGCGTTATATCGTTTAATCGTATTGAACCACTGAATAAAACCGCTGAAATAGGCTACTGGCTGGACGAATCTCATCAGGGGCAGGGGATCATTTCTCAGGCGCTGCAGGCATTGATTCATCATTACGCCCAGTCTGGAGAACTTAGACg > 1:192197/1‑251 (MQ=255) gAAGAGGACACGCGAAAAACGGTGCAGGGTAATGTGATGTTGCATCAACGCGGCTATGCCACAATGTTCATGATTTTCAAAGAAGATGAACTTATCAGCGTTATCTCGTTTCATCGTATTGAACCACTGAATAAAACCGCTGAAATAGGCTACTGGCTGGACGAATCTCATCAGGGGCAGGGGATCATTTCTCAGGCGCTGCAGGCATTGATTCATCATTACGCCCAGTCTGGTGCACTTAGACGCTTCGt > 1:139145/1‑251 (MQ=255) aaTGTGATGTTGCATCAACGCGGCTATGCCAAAATGTTCATGATTTTCAAAGAAGATGAACTTATCAGCGTTATCTCGTTTAATCGTATTGAACCACTGAATAAAACCGCTGAAATAGGCTACTGTCTGGACGAATCGCATCAGGGGCAGGGGATCATTGCGGAGGCGCTTCAGGCATTGATTCATCATTACGCCCAGTCTTGTGAACTTAGATGTGTCTTTAGCAAATGTCGGTTGGGCAATCCTCAAAg < 1:177637/251‑1 (MQ=255) aaTGTGATGTTGCATCAACGCGGCTATGCCAAAATGTTCATGATTTTCAAAGAAGATGAACTTATCAGCGTTATCTCGTTTAATCGTATTGAACCACTGAATAAAACCGCTGAAATAGGCTACTGGCTGGACGAATCTCATCAGGGGCAGGTGATCATTGCTCAGGCGCTGCAGGCATTGATTCATCATTACGCCCAGTCTGGTGAACTTAGACGCTTCGTGATCAAATGTCGGGTGGAc < 1:107387/240‑1 (MQ=255) tGCATCAACGCGGCTATGCCAAAATGTTCATGATTTTCAAAGAAGATGAACTTATCAGCGTTATCTCGTTTAATCGTATTGAACCACTGAATAAAACCGCTGAAATAGGCTACTGGCTGGACGAATCTCATCAGGGGCAGGGGATCATTTCTCAGGCGCTGCAGGCATTGATTCATCATTACGCCCAGTCTGGTGAACTTAGACGCTTCGTGATCAAATGTCGGGTGGACAATCCGCAAAGCAACCAGGt < 1:186205/250‑1 (MQ=255) cgcgGCTATGCCAAAATTTTCATGATTTTCAAAGAAGATGAACTTATCAGCTTTATCTCGTGTAATCGTATTGAACCACTGAATAAAACCGCTGAAATAGGCTACTGGCTGGACGAATCTCATCAGTGGCAGGGGATCATTTCTCAGGCGCGGCAGGCATTGAGTCATCATTACGCCCAGTCTGGTGAACTTAGACGCTTCGTGATCAAATGTCGGGTGGACAATCCGCAAAGCAACCAGGTCGCTTTgcg < 1:145642/251‑1 (MQ=255) | GAAACGATAAAAGTAAGCGAATCACTTGAATTACATGCTGTTGCAGAAAATCACGTCAAACCTCTTTATCAGTTAATCTGTAAAAATAAAACCTGGTTACAGCAGTCGCTAAACTGGCCGCAGTTTGTTCAAAGTGAAGAGGACACGCGAAAAACGGTGCAGGGTAATGTGATGTTGCATCAACGCGGCTATGCCAAAATGTTCATGATTTTCAAAGAAGATGAACTTATCGGCGTTATCTCGTTTAATCGTATTGAACCACTGAATAAAACCGCTGAAATAGGCTACTGGCTGGACGAATCTCATCAGGGGCAGGGGATCATTTCTCAGGCGCTGCAGGCATTGATTCATCATTACGCCCAGTCTGGTGAACTTAGACGCTTCGTGATCAAATGTCGGGTGGACAATCCGCAAAGCAACCAGGTCGCTTTGCG > NC_000913/1498944‑1499377 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |