| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 896,567 | C→T | T145I (ACC→ATC) | potH → | putrescine ABC transporter membrane subunit PotH |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 896,567 | 0 | C | T | 88.9% | 16.2 / ‑6.1 | 9 | T145I (ACC→ATC) | potH | putrescine ABC transporter membrane subunit PotH |
| Reads supporting (aligned to +/- strand): ref base C (0/0); major base T (4/4); minor base A (1/0); total (5/4) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CTGTTTACTGATCGGCTATCCGCTGGCGTGGGCGGTGGCGCACAGTAAGCCTTCGACCCGTAATATTTTATTACTACTGGTGATCCTGCCGTCGTGGACCTCGTTTCTGATCCGCGTTTATGCCTGGATGGGAATATTAAAAAACAACGGTGTGCTGAATAATTTTCTGCTGTGGCTGGGGGTTATCGATCAACCGCTGACCATTCTGCATACCAATCTGGCCGTTTATATCGGCATTGTTTACGCTTACGTGCCGTTTATGGTACTGCCGATTTATACCGCGTTGATTCGTATTGATTATTCGCTGGTGGAAGCAGC > NC_000913/896469‑896786 | cTGTTTACTGATCGGCTATCCGCTGGCGTGGGCGGTGGCGCACAGTAAGCCTTCGACCCGTAATATTTTAGTACTACTGGTGATCCTGCCGTCGTGGAtctc < 1:76306/102‑1 (MQ=255) tGATCGGCTATCCGCTGGCGTGGGCGGTGGCGCACCGCAAGGCTTCGACCAGTAAAATTTTACAACTACTAGTGCTCCTCCCGTCGAGGGACTCGTTTCTGCTCCGCCTTTATGCCTGGATGGGAATATTAAAAAACAACGGTGTGCTGAATAATTTTCTGCTGTGGCTGGGGGTTATCGATCCACCGCTGACCATTCTGCATACCCATCTGTCCGTTTTTTTCGGCTTTGTTTACGATTACGTGCCGttt > 1:89935/1‑251 (MQ=255) cgcACAGTAAGCCTTCGACCCGTAATATTTTATTACTACTGGTGATCCTGCCGTCGTGGATCTCGTTTCTGATCCGCGTTTATGCCTGGATGGGAATATTAAAAAACAACGGTGTGc > 1:35368/1‑117 (MQ=255) cgcACAGTAAGCCTTCGACCCGTAATATTTTATTACTACTGGTGATCCTGCCGTCGTGGATCTCGTTTCTGATCCGCGTTTATGCCTGGATGGGAATATTAAAAAACAACGGTGTGCTGAATAATTTTCTGCTGTGGCTGGGGGTTATCGATCAACCGCTGACCATTCTGCATACCAATCTGGCCGTTTATATCGGCATTGTTTACGCTTACGTGCCGTTTATGGTACTGCCGATTTATACCGCGTTGAtt > 1:174009/1‑251 (MQ=255) gTAAGCCTTCGACCCGTAATATTTTATTACTACTGGTGATCCTGCCGTCGTGGATCTCGTTTCTGATCCGCGTTTATGCCTGGATGGGNNTATTaanna > 2:11992/1‑99 (MQ=255) ngCCTTCGAACCGTAATATTTTATTACTACTGGTGATCCTGCCGTCGTGGATCTCGTTTCTGCTCCGCGTTTATGCCTGGATGGGAATATTAAAAAACAACGGTGTGCTGAATAATTTTCTGCTGTGGCTGGGGGTTATCGATCAACCGCTGACCATTCTGCATACCAATCTGGCCGTTTATATCGGCATTGTTTACGCTTACGTGCCGTTTATGGTACTGCCGATTTATACCGCGTTGATTCGTATTGat > 1:53889/2‑251 (MQ=255) ttattaCTACTTGTGATCCTGCCGTCGTGGATCTCGTTTCTGATCCGCGTTTATGCCTGGATGGGAATATTAAAAAACAACGGTGTGCTGAATAATTTTCTGCGGTGGCTGGGTGTTATCGATCAACCGCTGACCATTCTGCATACCAATCTTGCCGGTTATATCGGCATTGTTTACGCTTACGTGCCGTTTATGGTACTGCCGATTTGTACCGCGTTGATTCGTATTGATTATTCGCTGGTGGAagcag < 1:99714/250‑1 (MQ=255) tattaCTACTGGTGATCCTGCCGTCGTGGATCTCGTTTCTGATCCGCGTTTATGCCTGGATGGGAATATTAAAAAACAACGGTGTGCTGAATAATTTTCTGCTGTGGCTGGGGGTTATCGATCAACCGCTGACCATTCTGCATACCAATCTGGCCGTTTATATCGGCATTGTTTACGCTTACGTGCCGTTTATGGTACTGCCGATTTATACCGCGTTGATTCGTATTGATTATTCGCTGGTGGAagcagc < 1:11992/250‑1 (MQ=255) tCCTGCCGTCGTGGATCTCGTTTCTGATCCGCGTTTATGCCTGGATGGGAATATTAAAAAACAACGGTGTGCTGAATAATTTTCTGCTGTGGCTGGGGGTTATCGATCATCCGCTGACCATTCTGCATACCAATCTGGCCGTTTAGATCTGCATTGTTTACGCTGACGTGCCGTTTATGGTACTGCCGATTTGTACCGCGTTGATTCGTATTGATTATTCGCTGGTGGAagc < 1:190536/232‑1 (MQ=255) gtcgtGGATCTCGTTTCTGATCCGCGTTTATGCCTGGATGGGAATATTAAAAAACAACGGTGTGCTGAATAATGTTCTGCTGTGGCTGGGGGGGATCGATCAACCGCTGACCATTCTGCATACCAATCTGGCCGTTTATATCGGCATTGTTTACGCTTAc < 1:194760/160‑1 (MQ=255) | CTGTTTACTGATCGGCTATCCGCTGGCGTGGGCGGTGGCGCACAGTAAGCCTTCGACCCGTAATATTTTATTACTACTGGTGATCCTGCCGTCGTGGACCTCGTTTCTGATCCGCGTTTATGCCTGGATGGGAATATTAAAAAACAACGGTGTGCTGAATAATTTTCTGCTGTGGCTGGGGGTTATCGATCAACCGCTGACCATTCTGCATACCAATCTGGCCGTTTATATCGGCATTGTTTACGCTTACGTGCCGTTTATGGTACTGCCGATTTATACCGCGTTGATTCGTATTGATTATTCGCTGGTGGAAGCAGC > NC_000913/896469‑896786 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |