| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 881,604 | C→T | P293L (CCT→CTT) | dacC → | D‑alanyl‑D‑alanine carboxypeptidase DacC |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 881,604 | 0 | C | T | 85.7% | 10.8 / NA | 7 | P293L (CCT→CTT) | dacC | D‑alanyl‑D‑alanine carboxypeptidase DacC |
| Reads supporting (aligned to +/- strand): ref base C (0/0); major base T (3/3); minor base G (0/1); total (3/4) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
TCAACAAAATTCGTCAGCCTAACCGTAACCGTCTGCTGTGGAGCAGCAATCTGAATGTTGATGGCATGAAGACAGGAACCACGGCAGGCGCGGGATATAATCTGGTTGCTTCGGCTACCCAGGGCGATA‑TGCGTTTAATCTCCGTAGTGTTGGGGGCGAAAACCGACCGTATCCGTTTTAATGAGTCTGAGAAATTA‑TTGACCTGGGGTTTCCGCTTCTTTGAAACCGTGACGCCAATTAAACCTGATGCCACCTTTGTGACTCAGCGCGTCTGGTTTGGTGATAAGAGCGAAGTGAATCTCGGGGCAGGTGAAGCGGGCTCAGTGACCATACCGCGTGGGCAGCTGAAAAACCTGAAAGCGAGTTATACGTTAACGGAAC > NC_000913/881361‑881741 | tCAACAAAATTCGTCAGCCTAACCGTAACCGTCTGCTGTGGAGCAGCAATTTGAATGTTGATGGCATGAAGACAGGAACCACGGCAGGCGCGGGATATAATCTGGTTGCTTCGGCTACCCAGGGCGATA‑TGCGTTTAATCTCCGTAGTGTTGGGGGCGAAAACCGACCGTATCCGTTTTAATGAGTCTGAGAAATTA‑TTGACCTGGGGTTTCCGCTTCTTTGAAACCGTGACGCCAATTAAACTTGATgn < 1:53699/250‑2 (MQ=255) nntCNNNNNCCCNGGGCGATAGTG‑GTTTAAGCTCCGTCGTGTTGGGGGCGACAACCGACCGGAGCCGTTTTAATGAGGCTGAGAAATTG‑TTGCCCTGGGGTGTCCGCATCTTTGAAACCGTGACACCAATTAAACTTGATGCCAcc < 2:133239/144‑1 (MQ=255) ggCTACCCAGGGCGATA‑TGCGTTTAATCTCCGTAGTGTTGGGGGCGAAACCCGACAGTATCAGTTTTAATGAGTCTGAGAAATTA‑TTGACCTGGGGTTTCCGCTTCTTTGCAACCGTGACGCCAATTCAACTTGATGCCACCTTTGTGACTCAGCGCGTCTGGTTTGGTGATAAGAGCGAAGAGAATCTCGGGGCAGGTGAAGCGGGCTCAGTGACCATAc > 1:87422/1‑221 (MQ=255) agctcCGTAGTGTTGGGGGCGAAAACCGGCCGTATCCGTTTTAATTAGTCTGAGAAATTAGTTG‑CCGGTGGTTTCCGCTTCTTTGAAACCGTGAGGTCAATTAAACGTGATGCCACCTTTGTGACTCAGCGCGTCt < 1:85731/134‑1 (MQ=255) cTGGGGTTTCCGCTTCTTTGAAACCGTGACGCCAATTAAACTTGATGCCACCTTTGTGACTCAGCGCGTCTGGTTTGGTGATAAGAGCGAAGTGAATCTCGGGGCAGGTGAAGCGGGCTCAGTGACCATACCGNGTGNNNNNCtnn > 2:134587/1‑144 (MQ=255) cTGGGGTTTCCGCTTCTTTGAAACCGTGACGCCAATTAAACTTGATGCCACCTTTGTGACTCAGCGCGTCTGGTTTGGTGATAAGAGCGAAGTGAATCTCGGGGCAGGTGAAGCGGGCTCAGTGACCATACCGCGTGGGCAGCTGAAAAACCTGAAAGCGAGTTATACGTTAACGGaan < 1:134587/179‑2 (MQ=255) cttTGAAACCGTGACGCCAATTAAACTTGATGCCACCTTTGTGACTCAGAGCGTATGGTTTGGTGATAAGAGCGAAGTGAATCTCGGGGc > 1:208614/1‑90 (MQ=255) | TCAACAAAATTCGTCAGCCTAACCGTAACCGTCTGCTGTGGAGCAGCAATCTGAATGTTGATGGCATGAAGACAGGAACCACGGCAGGCGCGGGATATAATCTGGTTGCTTCGGCTACCCAGGGCGATA‑TGCGTTTAATCTCCGTAGTGTTGGGGGCGAAAACCGACCGTATCCGTTTTAATGAGTCTGAGAAATTA‑TTGACCTGGGGTTTCCGCTTCTTTGAAACCGTGACGCCAATTAAACCTGATGCCACCTTTGTGACTCAGCGCGTCTGGTTTGGTGATAAGAGCGAAGTGAATCTCGGGGCAGGTGAAGCGGGCTCAGTGACCATACCGCGTGGGCAGCTGAAAAACCTGAAAGCGAGTTATACGTTAACGGAAC > NC_000913/881361‑881741 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |