| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 871,936 | C→T | P16L (CCA→CTA) | gsiD → | glutathione ABC transporter membrane subunit GsiD |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 871,936 | 0 | C | T | 87.5% | 11.7 / NA | 8 | P16L (CCA→CTA) | gsiD | glutathione ABC transporter membrane subunit GsiD |
| Reads supporting (aligned to +/- strand): ref base C (0/0); major base T (3/4); minor base G (0/1); total (3/5) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GCTCGGTGGTTCCATCGTTGTGGAGAAAGTTTTCAACTGGCCGGGACTTGGACGCTTACTCGTTGACTCCGTAGAAATGCGTGATTACCCGGTGATTCAGGCGGAAATTCTGCTTTTCTCGCTGGAATTTATTCTTATCAACTTAGTGGTGGATGTGCTTTACGCCGCCATTAACCCGGCTATCAGGTACAAGTAAGGATGCGACTATTTAACTGGCGACGTCAGGCGGTGTTAAACGCCATGCCACTGGTCAAACCTGACCAGGTACGTACACCGTGGCATGAATTCTGGCGACGATTTCGCCGTCAGCATATGGCGATGACCGCCGCATTATTCGTTATTTTATTGATTGTGGTGGCCATTTTTGCACGCTGGATCGCTCCCTATGACGCCG > NC_000913/871692‑872085 | ncTCGGTGGTTCCATCGTTGTGGAGAAAGTTTTCAACTGGCCGGGACTTGGACGCTTACTCGTTGACTCCGTAGAAATGCGTGATTACCCGGTGATTCAGGCGGAAATTCTGCTTTTCTCGCTGGAATTTATTCTTATCAACTTAGTGGTGGATGTGCTTTACGCCGCCATTAACCCGGCTATCAGGTACAAGTAAGGATGCGACTATTTAACTGGCGACGTCAGGCGGTGTTACACGCCATGCTACTGGt > 1:130458/2‑251 (MQ=255) cAACTGGCCGGGACTTGGACGCTTACTCGTTGACTCCGTAGAAATGCGTGATTACCCGGTGATTCAGGCGGAAATTCTGCTTTTCTCGCTGGAATTTATTCTTATCAACGTAGTGGTGGATGTGCTTTACGCCGCCATTAACCCGGCTATCAGGTACAAGTAAGGATGCGACTATTTAACTGGCGACGTCAGGCGGTGTTAAACGCCATGCTACTGGTCAAACCTGACCAGGTACGTACACCGTGGCATg < 1:140282/250‑1 (MQ=255) nnnnnnnnnnaaNNNNNTCTNATCAACTTAGTGGTGGACGTGCTTTCCGCCGCCATTAACCCAGCTATCAGGTACAAGTAAGTATGCTACTATTTAACTGTCGACGGCAGGCGGTGTTAATCGCCAGGCTACCGGTCAACCCTGACCCGgtacg < 2:130458/144‑1 (MQ=255) aaCTTAGTGGTGGATGTGCTTTACGCCGCCATTAACCCGGTTATCAGGTACAAGTAAGGAGGCGACTATTTAACTGGCGACGTCAGGCGGTGTTAAACGCCATGCGACTGGTCAAACCTGACCAGGTGCGTACACCGGGGCATGAATTCTGTCGACGATTTCGCCGTCAGCATATGGCGATGACCGCCGCATTATTCGTTATTTTATTGATTGTGGTGGCCATTTTTGCACGCTGGATCGCTCCCTATGAc < 1:158418/251‑1 (MQ=255) aGTGGTGGATGTGCTTTACGCCGCCATTAACCCGGCTATCAGGTACAAGGAAGGATGCGACTATTTAACTGGCGACGTCAGGCGGTGTTAAACGCCATGCTACTGGTCAAACCTGACCAGGTACGTACACCGTGGCATGAAGTCTGGCGACGATTTCGCCGGCAGCATATGGCGAGGACCGCCGCATTATTCGTTATTTTATTGATTGTGGGGGCCATTTTTGCACGCTGGATCGCTCCCTATGACGCCg < 1:75858/250‑1 (MQ=255) gtggtgGATGTGCTTTACGCCGCCATTAACCCGGCTATCCGGTACAAGTAAGGATGCGACTATTTAACTGGCGACGTCAGGCGGTGTTAAACGCCATGCTACTGGTCaa > 1:29971/1‑109 (MQ=255) cAGGTACAAGTAAGGATGCGACTATTTAACTGGCGACGTCAGGCGGTGTTAAACGCCATGCTACTGGTCAAACCTGACCAGGTACGTACAcc < 1:30315/92‑1 (MQ=255) gACTATCTNANNNGNNACGTCAGGCGGCGTTAAACGCCATGCTACTGGTCAAACCTGACCNGGTACGTACACCGTGNCANGAATNCTGNCGACGATTTCGCCGTCAGCATATGGCGATGAccgc > 2:156437/1‑124 (MQ=255) | GCTCGGTGGTTCCATCGTTGTGGAGAAAGTTTTCAACTGGCCGGGACTTGGACGCTTACTCGTTGACTCCGTAGAAATGCGTGATTACCCGGTGATTCAGGCGGAAATTCTGCTTTTCTCGCTGGAATTTATTCTTATCAACTTAGTGGTGGATGTGCTTTACGCCGCCATTAACCCGGCTATCAGGTACAAGTAAGGATGCGACTATTTAACTGGCGACGTCAGGCGGTGTTAAACGCCATGCCACTGGTCAAACCTGACCAGGTACGTACACCGTGGCATGAATTCTGGCGACGATTTCGCCGTCAGCATATGGCGATGACCGCCGCATTATTCGTTATTTTATTGATTGTGGTGGCCATTTTTGCACGCTGGATCGCTCCCTATGACGCCG > NC_000913/871692‑872085 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |