| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 823,811 | C→T | A229A (GCG→GCA) | ybhP ← | endonuclease/exonuclease/phosphatase domain‑containing protein YbhP |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 823,811 | 0 | C | T | 87.5% | 13.4 / ‑5.9 | 8 | A229A (GCG→GCA) | ybhP | endonuclease/exonuclease/phosphatase domain‑containing protein YbhP |
| Reads supporting (aligned to +/- strand): ref base C (0/0); major base T (5/2); minor base A (1/0); total (6/2) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.67e-01 | |||||||||||
GGATAATATTGCTCGCCGTTTTCCAGCAACTGGATCTTATTGCCTTCGCGCCAGCTACATTTCATAAATGAATCTCCGCACTTAAAGGGGCATGATCAGAAAGGTGTCGCCATGTCCGCAGCGGCAACGCGGTTGGCGCGCTGGCGCTGGCATTTTTGACGTAGATCCTGTCCAGTCGTAGTAGAGGAAATTGCACCGGAAACGTGCGCGCCGGGCGTCCGTGGGCGCGGGTAAAAATCTCATCCAGTCCGGCCTGCACTTTTAACGGATGATTAGCTTTTTGCCGCCAGTCATTGAAATCACCCGCCACCAATACCGGTTCGCCGTCCGGTAGCTCATTCACCCATTCGGCGAGCATC > NC_000913/823675‑824033 | ggATAATATTGCTCGCCGTTTTCCAGCAACTGGATCTTATTGCCTTCGCGCCCGCTACATTTCATAAATGAATCTCCGCACTTAAAGGGGCATGATCAGAAAGGTGTCGCCATGTCCGCAGCGGCAACGCGGTTGGTGCGCTGGCGCTGGCATTTTTGACGTAGATCCTGTCCAGTCGTAGTAGAGGAAATTGCACCGGAAACGTGCGCGCCGGGCGTCCGTGGGCGCGGGTAAAAATCTCATCCAGTCCg > 1:209181/1‑251 (MQ=255) ncAGCAACTGGATCTTATTGCCTTCGCGCCAGCTACATTTCATAAATGAATCTCCGCACTTAAAGGGGCATGATCAGAAAGGTGTCGCCATGTCCGCAGCGGCAACGCGGTTGGTGCGCTGGCGCTGGCATTTTTGACGTAGATCCTGTCCAGTCGTAGTAGAGGAAATTGCACCGGAAACGTGCGCGCCGGGCGTCCGTGGGCGCGGGTAAAAATCTCATCCAGTCCGGCCTGCACTTTTAACGgatgat > 1:63508/2‑251 (MQ=255) cTTATTGCCTTCGCGCCAGCTACATTTCATAAATGAATCTCCGCACTTAAAGGGGCATGATCAGAAAGGTGTAGCCATGTCCGCAGCGGCAAAGCGGTTGGTGCGCTGGCGCTGGCATTTTTGACGTAGATCCTGACCAGCCGTAGTAGAGGAAATTGCACCGGAAACGTGCGCGCCGGGTGTCCGTGGGCGCGGGTAAAAATCTCATCCAGTCCGGCCTGCACTTTTAACGGATGATTAGCTTTTTgta > 1:118257/1‑248 (MQ=255) gcCAGCTACATTTCATAAATGAATCTCCGCAATTAAAGCGGCATGATCAGAAAGCTGTCGCCGTGACAGAAGCGGCAACGCGGTTGGAGCGCTGACGCCGGCATTCTTGACGTAGATCCTGTCCAGCCGCAGTCGAGGAAATTGCACCGGAAACGTGCGCGCCGGGCGTCCGTGGGCGCGGGTCAAACTCTCATCCAGTCCGACCTGCACTTTTAACGGCTGATTAGCTTTTTGCCGCCAGTCATTGAAAt > 1:83651/1‑251 (MQ=255) ccgaactaaaaGGGGCAGGAGCAGAAAGGGGTCGCAAGGTCCGCAGCGGCAACGCGGGTGGTGCGCGGGCGCTGGAATTTTTGACGGAGATCCTGTCCAGTCGTAGTAGAGAAAATTGCACGGGAAACGTGCGCGCCGGGCGTCCGGGGGCGCGGGTAAAAATCTCATCCATTCGGGCCTGCACTGTTAACGGATGATTAGCTTTTTGCCGCCAGTCATTGAAATCCCCCGCCCCCAATACCGGTTCGc < 1:92586/241‑1 (MQ=255) gATCAGAAAGGTGTCGCCATGTCCGCAGCGGCAACGCGGTTGGTGCGCTGGCGCTGGCATTTTTGACGTAGATCCTGTCCAGTCGTAGTagagn < 1:132370/94‑2 (MQ=255) gATCAGAAAGGTGTCGCCATGTCCGCAGCGGCAACGCGGTTGGTGCGCTGGCGCTGGCATTTTTGACGTAGATCCTGTCCAGTCGTAGTAGAgg > 2:132370/1‑94 (MQ=255) gCCATGTCCGCCGCGGCAACGCGGTTGGTGCGCTGGCGCTGGCATTTTTGACGTAGATCCTGTCCAGTCGTAGTAGAGGAAATTGCACCGGAAACGTGCGCGCCGGGCGTCCGTGGGCGAGGGTAAAAATCTCATCCAGTCCGGCCTGCACTTTTAACGGATGATTAGCTTTTTGCCGCCAGTCATTGAAATCACCCGCCACCAATACCGGTTCGCCGTCCGGTAGCTCATTCACCCATTCGGCGAGCATc > 1:70373/1‑251 (MQ=255) | GGATAATATTGCTCGCCGTTTTCCAGCAACTGGATCTTATTGCCTTCGCGCCAGCTACATTTCATAAATGAATCTCCGCACTTAAAGGGGCATGATCAGAAAGGTGTCGCCATGTCCGCAGCGGCAACGCGGTTGGCGCGCTGGCGCTGGCATTTTTGACGTAGATCCTGTCCAGTCGTAGTAGAGGAAATTGCACCGGAAACGTGCGCGCCGGGCGTCCGTGGGCGCGGGTAAAAATCTCATCCAGTCCGGCCTGCACTTTTAACGGATGATTAGCTTTTTGCCGCCAGTCATTGAAATCACCCGCCACCAATACCGGTTCGCCGTCCGGTAGCTCATTCACCCATTCGGCGAGCATC > NC_000913/823675‑824033 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |