| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 807,020 | C→T | G88S (GGC→AGC) | ybhC ← | outer membrane lipoprotein YbhC |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 807,020 | 0 | C | T | 88.9% | 17.1 / ‑5.4 | 9 | G88S (GGC→AGC) | ybhC | outer membrane lipoprotein YbhC |
| Reads supporting (aligned to +/- strand): ref base C (0/0); major base T (5/3); minor base G (0/1); total (5/4) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.44e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.79e-01 | |||||||||||
GGTTGACGTCGTGACGCCAGTCGGCAGGGCTCATGCCACCATCAAGGGAAAGCCCAATCTTCACATCAATCGGTTTTTCACCTGTACCGTACAGAGTAATTCCACCCGGAGCGGCAGGGACATATACCGTTCCCTGATACTCACCAGGCATCACGGCAATATACTGGCGCTTGTTGGTACGCTTGATAATTGCCGCATCTACCGCCGCCTGAATCGTGGTATGCGTTACACCTTGAGTGCCCGCCGGGCCGACAACAAAGTCAGGTTGCGCAGGCAGGGTAATCGGGGAAGGATTCCACGCTGCAGCACCTGGTGTCAGGGATGCAAAATAGTGTTGAGCATCGAAATTCTGCGCTTCTTTTGCCGACAGAATCGGGCGAGAAGAGGTACCAGGCGCGGTTTGATCAGAAGGACGTTGATCGGGCGGGGTTGAGCTACAGGCGGTCAG > NC_000913/806780‑807227 | ggTTGACGTCGTGACGCCAGTCGGCAGGGCTCATGCCACCATCAAGGGAAAGCCCAATCTTCACATCAATCGGTTTTTCACATGTACCGTACAGAGTAATTACACACGGAGCGGCAGGGACATATACCGTTCCCTGATACTCACCAGGCATCACGGCAATATACTGGCGCTTGTTGGTACGCTTGATAATTGCCGCATCTACCGCCGCCTGAATCGTGGTATGCGTTACACCTTGAGTGCTCGCCGGGcc > 1:194754/1‑250 (MQ=255) gCAGGGCTCATGCCACCATCAAGGGAAAGCCCAATCTTCACATCAATCGGTTTTTCACCTGTACCGTACAGAGTAATTCCACCCGGAGCGGCAGGGACATATACCGTTCCCTGATACTCACCAGGCATCACGGCAATATACTGGCGCTTGTTGGTACGCTTGATAATTGCCGCATCTACCGCCGCCTGAATCGTGGGATGCGTTACACCTTGAGTGCTCGCCGGGCCGACAACAAAGTCAGGTTGCgcagg > 1:50439/1‑251 (MQ=255) ccaccaTCAAGGGAAAGCCCAATCTTCACATCAATCGGTTTTTCACCTGTACCGTACAGAGTAATTCCACCCGGAGCGGCAGGGACATATACCGTTCCCTGATACTCACCAGGCATCACGGCAATATACTGGCGCTTGTTGGTACGCTTGATAATTGCCGCATCTACCGCCGCCTGAATCGTGGTATGCGTTACACCTTTAGTGCgcgccg < 1:174207/211‑1 (MQ=255) ccACCCGGAGCGGCAGGGACATATACCGTTCCCTGATACTCACCAGGCATCACGGCAATATACTGGCGCTTGTTGGTAAGCTTGATAATTGCCGCATCTAACGCCGCCTGAATCGTGGTATGCGTTACACCTTGAGTGCTCGCCGGGCCGACAACAAAGTCAGGTTGCGCAGGCAGGGTAATCGGGGAAGGATTACACGCTGCAGCACCt > 1:199680/1‑210 (MQ=255) gCGGCAGGGACATATACCGTTCCCTGATACTCACCAGGAATCACGGCAATATACTGGCGCTTGTTGGTACGCTTGATAATTGCCGCCTCTACCCCCGCCTGAATCGTGGTATGCGTTACACCTTGAGTGCTCGCCGGGCCGACAACCAAGTCAGGTTTCGCAGGCAGGGTAATCGGGGAAGGATTCCACGCTGCAGCACCTGGTGTCAGGGATGCAAAATAGTGTTGAGCATCGAAATTCTGCGCTTCttt > 1:203415/1‑251 (MQ=255) gcnatancnngNNCCCNGATACTCACCAGGCATCACGGNNATATACTGGNGCTTGTTGGTACGCTTGATAATTGCCGCATCTACCGCCGCCTGAATCGTGGTANGCGTTACACNNTGNGTGCGNGNNNGNNNGANAACAAAGTCAGGTTGCGCANGCNNGGTAATNGGGGAAGGATTCCACGCTGCAGCAcc < 2:50439/182‑1 (MQ=255) tataCCGTTCCCTGATACTCACCAGGCATCACGGCAATATACTGGCGCTTGTTGGTACGCTTGATAATTGCCGCATCTACCGCCTCCTGAATCGTTGGATGCGGTACACCTTGAGTGCTCGCCGGGCCGACAACAAAGTCAGGTTGCGcaggcaggn < 1:21435/157‑2 (MQ=255) ccAGGCATCACGGCAATATACAGGCGCTTGTTGGTACGCTTTATAATTGCCGCATCTACCGCCGCCTGAATCGTGGTATGCGTTACACCTTGAGTGCTCGCCGGGCCGACAACAAAGTCAGGTTGCGCAGGCATGGTAATCGGGGAAGGATTCCTCGCTGCAGCACCTGTTGTCAGGGATTCAAAATAGTGTCGAGCATCTAAATTCTGCGCTGCTTTTGCCGACAGAATCGGGCGAGAAGAGGTCCCAgg < 1:200190/251‑1 (MQ=255) gCCGCATCTACCGCCGCCTGAATCGTGGTATGCGTTACACCTTGAGTGCTCGCCGGGCCGACAACAAAGTCAGGTTGCGCAGGCAGGGTAATCGGGGAAGGATTCCACGCTGCAGCACCTGGTGTCAGGGATGCAAAATAGTGTTGAGCATCGAAATTCTGCGCTTCTTTTGCCGACAGAATCGGGCGAGAAGAGGTACCAGGCGCGGTTTGATCAGAAGGACGTTGATCGGGCGGGGTTGAGCTACAGGc > 1:181092/1‑251 (MQ=255) aCCGCCGCCTGAAGCGTGGTATGCGTTACTCCTTGAGTGCTCGCCGCGCCGACAACAAAGTCAGGTTGCGCAGGCAGGGTAATCGGGGAAGGATTCCTCGCTGCAGCACCTGGTGTCATGTATGCAAAATAGTGTTGAGCATCGAAATTCTGCGCTTCTTTTGCCGACAGAATCGGGCGAGAAGAGGTACCAGGCGCTGTTTGATCAGAAGGTGGTTGATCGGGCGGGGTTGAGCTACAGGCGGTCAg < 1:92287/248‑1 (MQ=255) | GGTTGACGTCGTGACGCCAGTCGGCAGGGCTCATGCCACCATCAAGGGAAAGCCCAATCTTCACATCAATCGGTTTTTCACCTGTACCGTACAGAGTAATTCCACCCGGAGCGGCAGGGACATATACCGTTCCCTGATACTCACCAGGCATCACGGCAATATACTGGCGCTTGTTGGTACGCTTGATAATTGCCGCATCTACCGCCGCCTGAATCGTGGTATGCGTTACACCTTGAGTGCCCGCCGGGCCGACAACAAAGTCAGGTTGCGCAGGCAGGGTAATCGGGGAAGGATTCCACGCTGCAGCACCTGGTGTCAGGGATGCAAAATAGTGTTGAGCATCGAAATTCTGCGCTTCTTTTGCCGACAGAATCGGGCGAGAAGAGGTACCAGGCGCGGTTTGATCAGAAGGACGTTGATCGGGCGGGGTTGAGCTACAGGCGGTCAG > NC_000913/806780‑807227 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |