| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 799,479 | C→T | H298H (CAC→CAT) | pgl → | 6‑phosphogluconolactonase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 799,479 | 0 | C | T | 90.0% | 16.4 / ‑3.6 | 10 | H298H (CAC→CAT) | pgl | 6‑phosphogluconolactonase |
| Reads supporting (aligned to +/- strand): ref base C (1/0); new base T (4/5); total (5/5) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.74e-01 | |||||||||||
GAAAACTTCTCCGACACCCGTTGGGCGGCTGATATTCATATCACCCCGGATGGTCGCCATTTATACGCCTGCGACCGTACCGCCAGCCTGATTACCGTTTTCAGCGTTTCGGAAGATGGCAGCGTGTTGAGTAAAGAAGGCTTCCAGCCAACGGAAACCCAGCCGCGCGGCTTCAATGTTGATCACAGCGGCAAGTATCTGATTGCCGCCGGGCAAAAATCTCACCACATCTCGGTATACGAAATTGTTGGCGAGCAGGGG‑CTACTGCATGAAAAAGGCCGCTATGCGGTCGGGCAGGGACCAATGTGGGTGGTGGTTAACGCACACTAACCGCTGATTTACCCGGCGCAGTCTCTCCTGCGCCGGTGTATTAACCTATCTCCTGTAACGCGTGTCTCTGGCGTTCGACGATATTGGTCCACAAATTGTCTTTATCGTC > NC_000913/799252‑799690 | gAAAACTTCTCCGACACCCGTTGGGCGGCTGATATTCATATCACCCCGGATGGTCGCCATTTCTCCGCCCGCGACCGTACCGCCCGCCTGATTACCGTTTTCAGCGTTTCGGAAGATGGCAGCGTGTTGAGTCAAGAAGGCTTCCCGCCAACGGAAACCCAGCCGCGCGGCTTCAATGTTGATCACAGCGGCAAGTATCTGACTGCCGCCGGGCAAAAATCTCACCGCAtcaacttggatctccagctgat > 1:98296/1‑231 (MQ=255) gcTGATATTCATATCACCCCGGATGGTCGCCATTTATACGCCTGCGACCGTACCGCCAGCCTGATTACCGTTTTCAGCGTTTCGGAAGATGGCAGCGTGTTGAGTAAAGAAGGCTTCCAGCCAACGGAAACCCAGCCGCGCGGCTTCAATGTTGATCACAGCGGCAAGTATCTGATTGCCGCCGGGCAAAAATCTCACCATATCTCGGTATACGAAATTGTTGGCGAGCAGGGG‑CTACTGCATGAAAAAgg > 1:51568/1‑251 (MQ=255) gCCAGCCTGATTACCGTTTTCAGCGTTTCGGAAGATGGCAGCGTGTTGAGTAAAGAAGGCTTCCAGCCAACGGAAACCCAGCCGCGCGGCTTCAATGTTGATCACAGCGGCAAGTATCTGATTGCCGCCGGGCAAAAATCTCACCATATCTCGGTATACGAAATTGTTGGCGAGCAGGTG‑CTACTGCATGAAAAAGGCCGCTATGCGGTCGGGCAGGGACTAATGTGGGTGGTGGTTAACGAACACTAAcc < 1:153557/251‑1 (MQ=255) tanaggntnnCNNAAGNGGGCAGCGTGTTGAGTAAAGANNGCTTCCAGCNAACGGAAGCCCAGCCGCGCGGCTTCAATGTTGATCACAGCGGCAAGTATCTGANTGCCGCCGGNNAANAATCGNANNNTNNNTCNGTATACGAAATTGTTGGCGNGCNNGGG‑CTANTGCATGAAAAAGGCCGCTATGCGGTc < 2:51568/185‑1 (MQ=255) gAAGATGGCAGCGTGTTGAGTAAAGAAGGCTTCCAGCCAACGGAAACCCAGCCGAGAGGCTTCAATGTTGATCACCGCGGCAAGTATCTGATTGCCGCCGGGCAAAAATCTCACCATATCTCGGTATACGCATTTGTTGGCGAGCAGGGG‑CTAc > 1:30405/1‑154 (MQ=255) tgtTGAGTAAAGAAGGCTTCCAGCCAACGGAAACCCAGCCGCGCGGCTTCAATGTTGATCACAGCGGCAAGTATCTGATTGCCGCCGGGCAAAAATCTCACCATATCTCGGt > 1:204613/1‑112 (MQ=255) aattgaatcattttttgcAGCCGCGCGGCTTCAATGTTGATCACAGCGGCAAGTATCTGATTGCCGCCGGGCAAAAATCTCACCATATCTCGGTATACGAAATTGTTGGCGAGCAGGGG‑CTACTGCATGAAAAAGGCCGCTATGCGGTCGGGCAGGGACCAATGTGGGTGGTGGTTAACGCACACTAACCGCTGATTTACCCGGCGCAGTCTCTCCTGCGCCGGTGTATTAACCTATCTCCTGTAAcgcgn < 1:134155/234‑2 (MQ=255) nnnnnnnnanacnncgCCNCGCTGCTTCAAGGGTGATCACAGCNGCAAGTATCTGATTGCCGCCGGGCAAAAATCNCNCCATATCTCGGTATACGAAATTGTGGGCGAGCAGGGG‑CTACTGCATGANAAAGGCCTCTNTGCNNTCTGNCNGNGACCAATGTGGGTGGTGGTTACCGCACACNAACCGCTGATTTCCCCGGCGCAGNNTCNNNTTNNCCGgt < 2:159819/206‑1 (MQ=255) gCCAACGGACACCCAGCCGCGCGGCTTCAATGTTGATCCAAGCGGCAAGTATCTGATTGCCGCGGGGCAAAAATATCCCCATATCTCGGTATACGAAATTGTTGGCGAGCAGGGG‑CTACTGCATGCAAAACGCCGCTATGCGGTCGGGCAGGGACCACTGTGGGTGGTGGTTAACGCACCCTAACCGCTGATTTACCCGGCGCAGTCTCTCCTGCGCCGgt > 1:159819/1‑221 (MQ=255) ggCAAGTAGCTGATTGCCGCCGTGCAAAAATCTCACCATTTCTCGGTATACGAAATTGTTGGCGAGCAGGGGTCTTCTGCATTAAAAAGTCCGCTATGCGTTCGTGCAGTGTCCAATGTGGGTGTTGGTTAACGCACACTAACCGCTGATTTACCCGGCTCATTCTCGCCGGCGCCGGTGTATTAACCTATCTCCTGTAACGCGTGTCTCTGTCGTTCGACGATATTGGTCCACAAATTGTCTTTATCGTc < 1:34675/251‑1 (MQ=255) | GAAAACTTCTCCGACACCCGTTGGGCGGCTGATATTCATATCACCCCGGATGGTCGCCATTTATACGCCTGCGACCGTACCGCCAGCCTGATTACCGTTTTCAGCGTTTCGGAAGATGGCAGCGTGTTGAGTAAAGAAGGCTTCCAGCCAACGGAAACCCAGCCGCGCGGCTTCAATGTTGATCACAGCGGCAAGTATCTGATTGCCGCCGGGCAAAAATCTCACCACATCTCGGTATACGAAATTGTTGGCGAGCAGGGG‑CTACTGCATGAAAAAGGCCGCTATGCGGTCGGGCAGGGACCAATGTGGGTGGTGGTTAACGCACACTAACCGCTGATTTACCCGGCGCAGTCTCTCCTGCGCCGGTGTATTAACCTATCTCCTGTAACGCGTGTCTCTGGCGTTCGACGATATTGGTCCACAAATTGTCTTTATCGTC > NC_000913/799252‑799690 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |