| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 4,308,169 | G→A | R104C (CGT→TGT) | alsE ← | D‑allulose‑6‑phosphate 3‑epimerase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,308,169 | 0 | G | A | 90.0% | 21.3 / NA | 10 | R104C (CGT→TGT) | alsE | D‑allulose‑6‑phosphate 3‑epimerase |
| Reads supporting (aligned to +/- strand): ref base G (0/0); major base A (3/6); minor base C (1/0); total (4/6) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.00e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.78e-01 | |||||||||||
TGGTTGCAGGAACCGTCCACCTCAATTTCGTACTCCAGACCTTCTCGTTCACGCCATGCCTTCAGTTCGGCAAGTTTATCCAGCATTTCAGGAATGAACGGTTGTCCGGCAAAGCCGGGATCGACAGTCATGACCGTAATTTTATCGGCCTTATGGATATAGTATTTCATGGCCTCAACTGGCGTCTCCGGGTTAAGGATCAGCCCCACTTTCATGTCATGACGGCGGATTTCATCAATCAGGCGGAACGCCTGGCCGTTGATGGTTTCCGGATGCAGAGTGATGAAATCTGCTCCCGCACGCGCCAGTTGAGCAATGTAATCCTGCGGCCGCGTCACCATCAGATGACAGTCGAGCGGTTTAGTTGCCAGTTTTTTAACCTGACTTACGAAGAACGGTGAGAGTGTCAGATTGGGGACAAAGTGACC > NC_000913/4307946‑4308373 | tGGTTGCAGGAACCGTCCACCTCAATTTCGTACTCCAGACCTTCTCGTTCACGCCATGCCTTCAGTTCGGCAAGTTTATCCAGCATTTCAGGAATGAACGGTTGTCCGGCAAAGCCGGGATCGACAGTCATGACCGTAATTTTATCGGCCTTATGGATATAGTATTTCATGGCCTCAACTGGCGTCTCCGGGTTAAGGATCAGCCCCACTTTCATGTCATGACAGCGGATTTCATCAATCAGGCGGAACGc > 1:8289/1‑251 (MQ=255) gTTGCAGGAACCGTCCACCTCAATTTCGTACTCCAGACCTTCTCGTTCACGCCATGCCTTCAGTTCGGCAAGTTTATCCAGCATTTCAGGAATGAACGGTTGTCCGGCAAAGCCGGGATCGACAGTCATGACCGTAATTTTATCGGCCTTATGGATATAGTATTTCATGGCCTCAACTGGCGTCTCCGGGTTAAGGATCAGCCCCACTTTCATGTCATGACAGCGGATTTCATCAATCAGGCGGAACGCCt > 1:2214/1‑251 (MQ=255) gCCATGCCTTCAGTTCGGCAAGTTTATCCAGCATTTCAGGAATGAACGGTTGTCCGGCAAAGCCGGGATCGACAGTCATGACCGTAATTTTATCGGCCTTATGGATATAGTATTTCATGGCCTCAACTGGCGTCTCCGGGTTAAGGATCAGCCCCACTTTCATGTCATGACAGCGGATTTCATCAATCAGGCGGAACGCCTGGCCGTTGATGGTTTCCGGATGCAGAGTGATGAAATCTGCTCCCGCAcgn < 1:55829/251‑2 (MQ=255) cAAGTTTATCCAGCATTTCAGGAATGNACGGTTNNCCNGCAAAGCCGGGATCGACAGNCANNNCNNNANTTTTANCGNNCTTATGGATNTAGTATTTCATGGCCTCAACTGGCGTCTCCGGGTTAAGGATCAGCCCCACTTTNATGTCATGANNGCGGCTTtcatca > 2:49145/1‑167 (MQ=255) ggAATGAACGGTTGTCCGGCAAAGCCGGGATCGACAGTCATGACCGTAATTTTATCGGCCTTATGGATATAGTATTTCATGGCCTCAACTGGCGTCTCCGGGTTAAGGATCAGCCCCACTTTCATGTCATGACAGCGGATTTCATCAATCAGGCGGAACGCCTGGCCGTTGATGGTTTCCGGATGCAGAGTGATGAAATCTGCTCCCGCACGCGCCAGTTGAGCAATGTAATCCTGCGGCCGCGTCACCAt > 1:168577/1‑251 (MQ=255) gTCCGGCAAAGCCGGGATCGACAGTCATGACCGTAATTTTATCGGCCTTATGGATATAGTATTTCATGGCCTCAACTGGCGTCTCCGGGTTAAGGATCAGCCCCACTTTCATGTCATGACAGCGGATTTCATCAATCAGGCGGAACGCCTGGCCGTTGATGGTTTCCGGATGCAGAGTGATGAAATCTGCTCCCGCACGCGCCAGTTGAGCAATg < 1:65774/215‑1 (MQ=255) cGGCAAAGCCGGGATCGACAGTCATGACCGTAATTTTATCGGCCTTATGGATATAGTATTTCATGGCCTCAACTGGCGTCTCCGGGTTAAGGATCAGCCCCACTTTCATGTCATGACAGCGGATTTCATCAATCAGGCGGAACGCCTGGCCGTTGATGGTTTCCGGATGCAGAGTGATGAAATCTGCTCCCGCACGCGCCAGTTGAGCAATGTAATCCTGCGGCCGCGTCACCATCAGATGACAGTCGAgn < 1:43451/251‑2 (MQ=255) gTCATGACCGTAATTTTATCGGCCTTATGGATATAGTATTACATGGCCTAAAATGACGTCCCCGAATTACGGATCAACCCCCCTTTCTTGTCATGACCACGGATTTCATAAATCAGGAGGCACGCCTGGACGTTGATgg > 1:144825/1‑139 (MQ=255) cnatncTCAANTGGCNCGTGCGGGTTAAGGANCAGCCCCACTTTCATGTCANNANAGCGGNTTtca < 2:86204/61‑1 (MQ=255) aCTGGCGTCTCCGGGGTAAGGATCAGCCCCACTTTCATGGCATGACAGCGGATTTCATCAATCAGGCGGAACGCCTGGCCGTTGATGGTTTCCGGATGCAGAGTGATGAAATCTGCTCCCGCACTCGCCAGGTGAGCAATGTAATCCTGCGGCCGCGTCACCATCAGATGACAGTCGAGCGGTTTAGTTGCCAGTTTTTTAGCCTGACTAAATAAGAACGGTGAGAGTGGCAGATTGGGGACAAAGTGAcc < 1:188717/251‑1 (MQ=255) anNGATCAGNNCCACTTTCATGTCATGACAGCGGATTTCATCAATCAGGCGGAACGCCTGGCCGTTGATGGTGTCCGGATGCAGAGTGATGAAATCTGc < 2:2214/99‑1 (MQ=255) | TGGTTGCAGGAACCGTCCACCTCAATTTCGTACTCCAGACCTTCTCGTTCACGCCATGCCTTCAGTTCGGCAAGTTTATCCAGCATTTCAGGAATGAACGGTTGTCCGGCAAAGCCGGGATCGACAGTCATGACCGTAATTTTATCGGCCTTATGGATATAGTATTTCATGGCCTCAACTGGCGTCTCCGGGTTAAGGATCAGCCCCACTTTCATGTCATGACGGCGGATTTCATCAATCAGGCGGAACGCCTGGCCGTTGATGGTTTCCGGATGCAGAGTGATGAAATCTGCTCCCGCACGCGCCAGTTGAGCAATGTAATCCTGCGGCCGCGTCACCATCAGATGACAGTCGAGCGGTTTAGTTGCCAGTTTTTTAACCTGACTTACGAAGAACGGTGAGAGTGTCAGATTGGGGACAAAGTGACC > NC_000913/4307946‑4308373 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |