| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 4,127,469 | C→T | M142I (ATG→ATA) | yiiX ← | putative lipid‑binding hydrolase YiiX |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,127,469 | 0 | C | T | 93.3% | 34.6 / ‑6.0 | 15 | M142I (ATG→ATA) | yiiX | putative lipid‑binding hydrolase YiiX |
| Reads supporting (aligned to +/- strand): ref base C (0/0); major base T (7/7); minor base G (1/0); total (8/7) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CGCCGCACGGCGCTTTTTTTGTGCCTGAATTTTGGTCGTATTACCACGAAAACAGCGGCCATTCTTTGGCGACCGTGGTGAGTTGTGGCGCATCGAAAACGGCTTGTGGCGAGACCACCGTTTCCTCAAGCGGAATATTCTTGCCGTAACGTTCTTTGAGCTTTGCCTGAACTTGTGGGCTGCTCAGGTCGAACTCTTTCAACTTCTGCTGCTCGCCCACGCGCATTCCCAGCGCGTTCTGGTAAACCTTCCACACCACTTCCGAACAGTACTGGCGATCGTCGCTCCATGAGAAGCTGAAATCATACGGTTTACCGAGATAACGTTTTGCCGTTTGCGCCAGTTTTTGCTGTTGTTCAACACTCAGTCCGCCTTCAACGCGGCGAACAACGTATTTGCCCTTTTCACCATGGGCGATCCACTGCTTGAGCGGGGTG > NC_000913/4127246‑4127682 | cgccgcACGGCGCTTTTTTTGTGCCTGAATTTTGGTCGTATTACCACGAAAACAGCGGCCATTCTTTGGCGACCGTGGTGAGTTGTGGCGCATCGAAAACGGCTTGTGGTGAGACCACCGTTTCCTCAAGCGGAATATTCTTGCCGTAACGTTCTTTGAGCTTTGCCTGAACTTGTGGGCTGCTCAGGTCGAACTCTTTCAACTTCTGCTGCTCGCCCACGCGTATTCCCAGCGCGTTCTGGTAAACCTTc < 1:67887/251‑1 (MQ=255) gtnttgNCNNANNGAANACGGCTTGTGGCGAGACCACCNNTTCCTCAAGNGGAATATTCTTGCCGTAACGTGCTTTGAGCTTTGCCTGAACTGGTGGGCTGCTNAGGGCGAACNNCTNCAATTNCNNNCNNNCGNCCCCGCGTATTCCCAGCGCNGTNNGGTAAANCTTTCACGCCACTGCCGAACAGTACt < 2:46594/188‑1 (MQ=255) ggCGCATCGAAAACGGCTTGTGGCGAGACCACCGTTTCCTCAAGCGGAATATCCTTACCGTAACGTTCTTTGAGCTTTGCCTGAACTTGTAGACTGCTCAGGTCGAACTCTTTCAACTTCTGCTGCTCGCCCACGCGTATTCCCAGCGCGTTCTGGTAAACCTTCcac > 1:206551/1‑168 (MQ=255) cGAAAACGGCTTGTGGCGAGACCACCGTTTCCTCAAGCGGAATATTCTTGCCGTAACGTTCTTTGAGCTTTGCCTGAACTTGTGGGCTGCTCAGGTCGAACTCTTTCAACTTCTGCTGCTCGCCCACGCGTATTCCCAGCGCGTTCTGGTAAACCTTCCACACCACTTCCGAACAGTACTGGCGATCGTCGCTCCATGAGAAGCTGAAATCATACGGTTTACCGAGATAACGTTTTGCCGTTTGCGCCAg < 1:71918/250‑1 (MQ=255) tgGCGAGACCACCGTTTCCTCAAGCGNAATATTNNTGNCGTAACGTTCTTTGAGCTTNGCNNNANNNTNTGGGCNGCNNAGGTCGAACNCTTTCAACTTCTGCTGCTCGCCCACGCGTATTCCCAGCGCGTTCTGGTACACCNTCCACACCANNTCCGAACAGTACTGGCGATCGNCGCNNCNNGNGAANCt > 2:48290/1‑192 (MQ=255) gagaCCACCGTTTCCTCAAGCGGAATATTCTTGCCGTAACGTTCTTTGAGCTTTGCCTGAACTTGTGGGCTGCTCAGGTCGAACTCTTTCAACTTCTGCTGCTCGCCCACGCGTATTCCCAGCGCGTTCTGGTAAACCTTCCACACCACTTCCGAACAGTACTGGCGATCGTTGCTCCATGAGAAGCTGAAATCATACGGTGTACCGAGATTACGTTTTGCCGTTTGCGCCAGTTTTTGCTGTTGTTCaan < 1:43502/251‑2 (MQ=255) gagaCCACCGTTTCCTCAAGCGGAATATTCTTGCCGTAACGTTCTTTGAGCTTTGCCTGAACTTGTGGGCTGCTCAGGTCGAACTCTTTCAACTTCTGCTGCTCGCCCACGCGTATTCCCAGCGCGTTCTGGTAAACCTTCCACACCACTTCCGAACAGTACTGGCGATCGTCGCTCCATGAGAAGCTGAAATCATACGGTTTACCGAGATAACGTTTTGCCGTTTGCGCCAGTTTTTGCTGTTGTTCaan < 1:128427/251‑2 (MQ=255) cTCAAGCGGAATATTCTTGCCGGAACGTTCTTTGAGCTTTGCCTGAACTTATGAGCTGCTCTGGGCAACCTCTTTCCCCTTCTGCTGCTCGCCCACGCGTATTCCCAGCGCGCTCTGGTAAACCTTCCACACCACTTCCGAACAGTACTGTCGATCGTCGCTCCATGAGAAGCTGAAATCATACGGTTTACCGAGATAACGTTTTGCCGTTTGCGCCAGTTTTTTCTGTTGTTCAACACTCAGTCCGCCtt > 1:209910/1‑251 (MQ=255) cTTTGCCTGAACTTGTGGGCTGCTCAGGTCGAACTCTTTCAACTTCTGCTGCTCGCCCCAGAGGATTCCAAGCGCGTTCTGGTAAAc > 1:190326/1‑87 (MQ=255) ctCAGGTCGCACTCTTTCACATTCTGCTGCTCGCCCACGCGTATTCCCAGCGCGTTCTGGTAAACCTTCCACACCACTTCCGAACAGTACTGGCGATCGTCGCTCCATGAGAAGCTGAAATCATACGGTTTACCGAGATAACGTTTTGCCGTTTGCGCCAGTTTTTGCTGTTGTTCAACACTCAGTCCGCCTTCaa > 1:179657/1‑196 (MQ=255) ggTCGAACTCTTTCAACTACTGCTGCTCGCCCACGGGTATTCCCAGCGCGTTCTGGTAAACCTTCCACACCACTTCCGCACAGTACTGGCGATCGTCGCTCCATGAGAAGCTGAAATCATACGGTTTACCGAGATAACGTTTTGCCGTTTGCGCCAGTTTTTGCTGTTGTTCAACACTCAGTCCGCCTTCAACGCGGCGAACAACGTATTTGCCCTTTTCACCATGGGCGATCCACTGCTTGAGCGGGgtg > 1:75314/1‑251 (MQ=255) gAACTNNTTNNNCTNNTGCTGCTCGCCCACGCGTATTCCNAGCGCGTTCTGGTAAACCTTCCACACCACNTNCNAACANNACTNGCGATCGTCGNTCCATGAGAAGCTGAAATCATACGGTTTACCGAGATAACGTTTTGCCGNTNg > 2:162495/1‑147 (MQ=255) gAACTCTGTCAACTTCTGCTGCTCGCCCACGCGTATTCCCAGCGCTTTCTGGTAAACCTTCCACACCACTTCCGAACAGTACTTGCGATCGTCGCTCCATGAGAATCTGTAATCATACGGTTTACCGAGATAACGTTTTGCCGTTTg < 1:162495/147‑1 (MQ=255) tttCANCTTCTNCNNCTCGCCCACGCGTATTCCCNGCGCGTTCTGGTAAANCTTCnac > 2:84688/1‑58 (MQ=255) tttCAACTTCTGCTGCTCGCCCACGCGTATTCCCAGCGCGTTCTGGTAAACCTTCcac < 1:84688/58‑1 (MQ=255) | CGCCGCACGGCGCTTTTTTTGTGCCTGAATTTTGGTCGTATTACCACGAAAACAGCGGCCATTCTTTGGCGACCGTGGTGAGTTGTGGCGCATCGAAAACGGCTTGTGGCGAGACCACCGTTTCCTCAAGCGGAATATTCTTGCCGTAACGTTCTTTGAGCTTTGCCTGAACTTGTGGGCTGCTCAGGTCGAACTCTTTCAACTTCTGCTGCTCGCCCACGCGCATTCCCAGCGCGTTCTGGTAAACCTTCCACACCACTTCCGAACAGTACTGGCGATCGTCGCTCCATGAGAAGCTGAAATCATACGGTTTACCGAGATAACGTTTTGCCGTTTGCGCCAGTTTTTGCTGTTGTTCAACACTCAGTCCGCCTTCAACGCGGCGAACAACGTATTTGCCCTTTTCACCATGGGCGATCCACTGCTTGAGCGGGGTG > NC_000913/4127246‑4127682 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |