| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 794,059 | C→T | A196T (GCG→ACG) | modE ← | DNA‑binding transcriptional dual regulator ModE |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 794,059 | 0 | C | T | 90.9% | 17.5 / NA | 11 | A196T (GCG→ACG) | modE | DNA‑binding transcriptional dual regulator ModE |
| Reads supporting (aligned to +/- strand): ref base C (0/0); major base T (3/7); minor base G (0/1); total (3/8) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
ATTAAAGTAGGCCGTGACATTCTGTCCTTGCTGAAGAGAAGTCGCTTCATTTACCGGCACTGTGGCGCACAGTGTTTGCCCGTCGGGTAGCGCCATTAATACTTCGCACTGCTCTGCGCCGCGCTCAATATGACTAATAATACCCGGTAATTGGTTGTCAGCGTTTTGCGCGACCGCCTCGTCCTGAGTAATACCTACCCACGGCGCTTTTAGCAATATCAACACTTCTTTGCCTTCATCCAGCCCCAGACGCGCGCCGCTTTGTGCGGTAATTGCGACTTTCAGGCGTGTTTTTCCGTCAGCCAGTAAGACATCAACATGCTGTTGAACGTCATCATGATCGCGGGCGGTGATGGTACCGAACCACTGGTTACGGGCGCTGGTTTGCAGTGAAAAACGTGAG > NC_000913/793889‑794291 | aTTAAAGTAGGCCGTGACATTCTGTCCTTGCTGAAGAGAAGTCGCTTCATTTACCGGCACTGTGGCGCCCAGTGGTTGCCCGTCGGGTAGCGCCATTAATACTTCGCACTGCTCTGCGCCGCGCGCAATATGACTAATAATACCCGGTAATTGGTTGTCAGCGTTTTGCGTGACCGCCTCGTCCTGAGTAATACCTACCCACGGCGCTTTTAGCAATATCAACACTTCTTTGCCTTCATCCAGCCCCAGAc < 1:31503/251‑1 (MQ=255) aaGTAGGCCGTGACATTCTGTCCTTGCTGAAGAGAAGTCGCTTCATTTACCGGCACTGTGGCGCACAGTGTTTGCCCGGCGGGTAGCGCCATTAATACTTCGCACTGCTCTGCGCCGCGCTCAATATGACTAATAATACCCGGTAATTGGTTGTCAGCTTTTGGCGTGACCGCCTCGTCCTGAGTAAGACCTACCCACTGCGCTTTTAGCAATATCAACACTTCTTTGCCTTCATCCAGCCCCAGAcgcgc < 1:116622/251‑1 (MQ=255) gTCCTTGCTGAAGAGAAGTCGCTTCATTTACCGGCACTGTGGCGCACAGTGTGTGCCCGTCGGGTAGCGCCATTAATACTTCGCACTGCTCTGCGCCGCGCTCAATATGACTAATAATACCCGGTAATTGGTTGTCAGCGTTTTGCGTGACCGCCTCGTCCTGAGTAATACCTACCCACGGCGCTTTTAGCAATATCAACACTTCTTTGCCTTCATCCAGCCCCAGACGCGCGCCGCTTTGTGCgg < 1:157293/246‑1 (MQ=255) cTGTGGCGCACAGTGTTTGCCCGTCGGGTAGCGCCATGAATACTTCGCACTGCTCTGCGCCGCGCTCAATATGACTAATAATACCCGTGAATTGGTTGTCAGCGTTTTTCGTGACCGCCGCGTCCTGAGTAAGACCTACCCACGACGCTTTTATCAATATCAACACTGCTTTGCCTTCATCCAGCCCCAGAcgcgc < 1:28690/196‑1 (MQ=255) ggCGCACAGTGTTTGCCCGTCGGGTAGCGCCATTAATACTTCGCACTGCTCTGCGCCGCGCTCAATATGACTAATAATACCCGGTAATTGGTTGTCAGCGTTTTGCGTGACCGCCTCGTCCTGAGTAATACCTNCCCNNNnngcnnnnnnnnnn > 2:131262/1‑144 (MQ=255) naCTGCTCTGCGCCGCGCTCAATATGACTAATAATACCCGGTAATTGGTTGTCAGCGTTTTGCGTGACCGCCTCGTCCTGAGTAATACCTACCCACGGCGCTTTTAGCAat > 1:137242/2‑111 (MQ=255) aaCTGCTCTGCGCCGCGCTCAATATGCCTAATAATACCCGGTAATTGGTTGTCAGCGTTTTGCGTGACCGCCTCGTCCTGAGTAATCCCTACCCACGGCGCTTTTAGCAat < 2:137242/110‑1 (MQ=255) ctGCGCCGCCCTCAATATGACTAATAATGCCCGTGAAGTGGTTGTCAGCGTTGTGCGTGACCGCCTCGTCCTGATTAATACCTACCCACGGCGCTTTTAGCAATATCAACACGTCTGTGCCTTCAGCCAGCCCCAGACGCGCGCCGCGTTGTGCGGTAATCGCGACGTTCAGGCGTGTTTTTCCGGCAGCCAGTAAGACATCAACATGCTGTTGAACGTCATCATGATCGCGGGCGGTGATGGTACCg < 1:188361/248‑1 (MQ=255) gggaaTTGGTGGTCAGCGTTTTGCGGTACCGCCTCGTCCTGAGTAATACCTACCCACGGCGCTTTTAGCAATAGCAACACTTCTTTGCCTTAATCCAGCCCCAGACGCGCGCCGCTTTGTGCGGTAATTgn < 1:23641/128‑2 (MQ=255) ggTTTTCAGCGTTTTGCGTGACCGCCTCGTCCTGAGTAATACCTACCCACGGCGCTTTTAGCAATATCAACACTTCTTTGCCTTCATCCAGCCCCAGACGCGCGCCGCTTTGTTCGGTAATTGCGACTTTCAGGCGTGTTTTTCCGTCAGCCAGTAAGACATCAACATGCTGTTGAACGTCAGCATGATCGCGGTCGGTGAGGGTACCGAACCACTGGTTACGGGCGCTGGTTTGCAGTGAAAAACGTgag < 1:209986/251‑1 (MQ=255) tGCGTGACCGCCTCGTCCTGAGTAATACCTACCCACGGCGCTTTTAGCAATATCAACACTTCTTTGCCTTCATCCAGCCCCAGACGCGCGCCGCTTTGTGCGGTAATTGCGACTTTCCGGCGTGttttt > 1:6022/1‑129 (MQ=255) | ATTAAAGTAGGCCGTGACATTCTGTCCTTGCTGAAGAGAAGTCGCTTCATTTACCGGCACTGTGGCGCACAGTGTTTGCCCGTCGGGTAGCGCCATTAATACTTCGCACTGCTCTGCGCCGCGCTCAATATGACTAATAATACCCGGTAATTGGTTGTCAGCGTTTTGCGCGACCGCCTCGTCCTGAGTAATACCTACCCACGGCGCTTTTAGCAATATCAACACTTCTTTGCCTTCATCCAGCCCCAGACGCGCGCCGCTTTGTGCGGTAATTGCGACTTTCAGGCGTGTTTTTCCGTCAGCCAGTAAGACATCAACATGCTGTTGAACGTCATCATGATCGCGGGCGGTGATGGTACCGAACCACTGGTTACGGGCGCTGGTTTGCAGTGAAAAACGTGAG > NC_000913/793889‑794291 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |