| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 4,045,252 | C→T | P352S (CCG→TCG) | yihF → | DUF945 domain‑containing protein YihF |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,045,252 | 0 | C | T | 95.0% | 52.2 / NA | 20 | P352S (CCG→TCG) | yihF | DUF945 domain‑containing protein YihF |
| Reads supporting (aligned to +/- strand): ref base C (0/0); major base T (10/9); minor base G (0/1); total (10/10) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.79e-01 | |||||||||||
GATAAGTTAACAAAAGGGAATCAGCAACTCGGTAGTGGTGAGTGGTCATTGATTGCTGAATCTATTGATCCCTCAGCAGTGCGCCAATTTATCATCCAGTATAACATTGCGATGCAGAAGCAGCTTGCTGCACACCCTGAGTTAGCAAACGATGAAGTTGCTCTGCAAGAAGTGAATGCTGCATTGTTCAAAGAGTATTTACCGTTATTACAAAAAAGTGAGCCGACCATTAAACAACCGGTAAGATGGAAGAACGCACTCGGCGAACTAAATGCCAATCTGGATATCAGTATTGCCGACCCAGCCAAATCTTCATCATCCACAAACAAAGATATCAAATCGCTCAATTTTGATGTGAAGTTACCGCTTAATGTCGTCACAGAA > NC_000913/4045015‑4045398 | gATAAGTTAACAAAAGGGAATCAGCAACTCGGTAGTGGTGAGTGGTCATTGATTGCTGAATCTATTGATCCCTCAGCAGTGCGCCAATTTATCATCCAGTATAACATTGCGATGCAGAAGCAGCTTGCTGCACACCCTGAGTTAGCAACCGATGAAGTTGCTCTGCAAGAAGTGAATGCTGCATTGTTCAAAGAGTATTTACCGTTATTACAAAAAAGTGAGCCGACCATTAAACAATCGGTAAGATGga > 1:117345/1‑250 (MQ=255) tAAGTTAACAAAAGGGAATCAGCAACTCGGTAGTGGTGCGTTGTCATTGATTGCTGAATCTATTGATCCCTCAGCAGTGCGCCAATTTATCCTCCAGTATAACATTGCGATGCAGAAGCAGATTGCTGCACACCCTGAGTTAGCAAACGATGAAGTTGCTCTGCAAGAAGTGAATGCTGCATTGTTCAAAGAGTATTTACCGTAATTACAATAAAGTGAGCCGACCATTAAACAATCGGTAAGATGga > 1:82892/1‑248 (MQ=255) gTTAACAAAAGGGAATCATCAACTCGTTAGTGTTGAGTGGTCATTGATTGCTGAATCTATTGATCCCTCAGCAGCGCGCCAATTTATCATCCAGTATAACATTGCGATGCAGAAGCAGCTTGCTGCACACTCTGATTTAGTAATCGATTAAGGTGCTCTGCAAGAATTTAATGCTGCATTTTGCAAAGAGTAGTTTCCGTTATCACAAAAAAGTGAGCCGACCATTAAACAATCGGTAAGATGga < 1:102366/245‑1 (MQ=255) cAACTCGGTAGTGGTGAGTGGTCATTGATTGCTGACTCACTAGATCCCTCCGCAGTGCGCCAATTTATCATCCAGTATAACATTGCGATGCAGAAGCAGCTTGCTGCACACCCTGAGTTCGCAAACGCTGAAGTTGCTCTGCAAGAAGTGAATGCTGCATTGTTCAAAGAGTATTTACCGTTATTACAAAAAAGTGAGCCGACCATTAAACAATCGGTAAGATGGAAGAACGCACTCGGCGAACTAAATGc > 1:191371/1‑251 (MQ=255) aaCTCGGTAGTGGTGAGTGGTCATTGATTGCTGAATCTATTGATCCCTCAGCAGTGCGCCAATTTATCATCCAGTATAACATTGCGATGCAGAAGCAGCTTGCTGCACACCCTGAGTTAGCAAACGATGAAGTTGCTCTGCAAGAAGTGAATGCTGCATTGTTCAAAGAGTATTTACCGTTATTACAAAAAAGTGAGCCGACCATTAAACAATCGGTAAGATGGAAGAACGCACTCGGCGAACTAAATGcc < 1:92353/251‑1 (MQ=255) gCTGAATCTATTGATCCCTCAGCAGTGCGCCAATTTATCATCCAGTATAACATTGCGATGCAGAAGCAGCTTGCTGCACACCCTGAGTTAGCAAACGATGAAGTTGCTCTGCAAGAAGTGAATGCTGCATTGTTCAAAGAGTATTTACCGTTATTACAAAAAAGTGAGCCGACCATTAAACAATCGGTAAGATGGAAGAACGCACTCGGCGAACTAAATGCCAATCTGGATATCAGTATTGCCGACCCAGc < 1:172042/251‑1 (MQ=255) ccAATTTATCATCCAGTATAACATTGCGATGCAGAAGCAGCTTGCTGCACACCCTGAGTTAGTAAACGATGCAGTTGCTCTGCAAGAAGTGAATGCTGCCTTGTTCCAAGAGTATTTACCGTTCTTCCAAAAAAGTGAGCCGACCATTAAACAATCGGTAAGATGGCAGAACGCACTCGGCGCACTAAATTCCAATCTGGATATCAGTATTGCCGCCCCAGCCAAATCTTCATCATCCACAAACAAAGat > 1:160451/1‑250 (MQ=255) gCGATGCAGAAGCAGCTTGCTGCACANCCTGAGNNAGNAAACGATGAAGTTGCTCTGNAANNNGNNNANGCTGCNTTNNTCAAAGAGTNTTTACCGTTATTACAAAAAAGTGAGCCGACCATTAAACAATCGGTAAGATGGANGAACGCACTNNGCGAACTAAATGCCAATCTGGNTATNNGNNTNGCCNAcn > 2:46708/1‑192 (MQ=255) gCGATGCAGAAGCAGCTTGCTGCACACCCTGAGTTAGCAAACGATGAAGTTGCTCTGCAAGAAGTGAATGCTGCATTGTTCAAAGAGTATTTACCGTTATTACAAAAAAGTGAGCCGACCATTAAACAATCGGTAAGATGGAAGAACGCACTCGGCGAACTAAATGCCAATCTGGATATCAGTATTGCCGACCCAg < 1:46708/196‑1 (MQ=255) gcACACCCTGAGTTAGCAAACGATGAAGTTGCTCTGCAAGAAGTGAATGCTGCATTGTTCAAAGAGTATTTACCGTTATTACAAAAAAGTGAGCCGACCATTAAACAATCGGTAAGATGGACGAACGCACTCGGCGAACTAAATGCCAATCTGGATATCAGTATTGCCGACCCAGCCAAATCTTCATCATCCACAAACAAAGATATCAAATCGCTCAATTTTGATGTGAAGTTACCGCTTAATGTCGTcac > 1:178838/1‑251 (MQ=255) gcACACCCTGAGTTAGCAAACGATGAAGTTGCTCTGCAAGAAGTGAATGCTGCATTGTTCAAAGAGTATTTACCGTTATTACAAAAAAGTGAGCCGACCATTAAACAATCGGTAAGATGGAAGAACGCACTCGGCGAACTAAATGCCAATCTGGATATCAGTATTGCCGACCCAGCCAAATCTTCATCATCCACAAACAAAGATATCAAATCGCTCAATTTTGATGTGAAGTTACCGCTTAATGTCGTcac < 1:14616/251‑1 (MQ=255) cccTGAGTTAGCAAACGATGAAGTTGCTCTGCAAGAAGTGAATGCTGCATTGTTCAAAGAGTATTTACCGTTATTACAAAAAAGTGAGCCGACCATTAAACAATCGGTAAGATGGAAGAACGCACTCGGCGAACTAAATGCCAATCTGGATATCAGTATTGCCGACCCAGCCAAATCTTCATCATCCACAAACAAAGATATCAAATCGCTCAATTTTGATGTGAAGTTACCGCTTAATGTCGTCACAGaa > 1:125741/1‑250 (MQ=255) cccTGAGTTAGCAAACGATGAAGCTGCTCTGCAAGAAGTGACTGCTGCATTGTTGCAAGAGTCTTTACCGTTATTACAAAAAAGTGAGCCGCCCATTAAACACTCGGTAAGATGGAAGAACGCACTCGGCGAACTAAATGCCACTCTGGATATCAGTATTGCCGACCCAGCCAACTCTtca > 1:89087/1‑181 (MQ=255) gATGAAGTTGCTCTTCAAGAAGTGAATGCTGCATTGTCCAAAGAGTATTTACCGTTATTACAAAAAAGTGAGCCGACCATTAAACAAGCGGTAAGATGGAAGAACGCACTCGGCGAACTAAATGc < 1:211122/125‑1 (MQ=255) cAAGANNTGNNNGCNNCATTGTTCAAAGAGTATTTACCGNTATTACAAAAAAGTGAGCCGACCATTAAANANTNGGTANNATGNAAGAACGCACNCGGCGAACTAAATGCCAATCTGGATATCAGTATTGcc > 2:164091/1‑132 (MQ=255) cAAGAATTGAATGCTGCATTGTTCAAAGAGTATTTACCGTTATTACAAAAAAGTGAGCCGACCATTAAACAATCGGTAAGATGGAAGAACGCACGCGGCGAACTAAATGCCAATCTGGATATCAGTATTGcc < 1:164091/132‑1 (MQ=255) aaNAGTATNTACCNTTATTACAAAAAAGTNAGCCGACCATTAAACAATCNNTNAGAGGnaagaa < 2:82892/64‑1 (MQ=255) ttattaCAAAAAAGTGAGCCGACCATTAAACAATCGGTAAGATGGAAGAACGCACTCGGCGAACTAAATGCCAATCTGGATATCAGTATTg < 1:45703/91‑1 (MQ=255) gTGAGCCGACCATTAAACAATCGGTANGATGGANNAANGCACTCGGCGAACTAAATGNCANNNTNNNTNTCAGTNTTNNCGACCCAGCNAAATCTTCATCATCCACAAACAAAGATATCAAATCGCTCAATTTTGATGTGAANTTACCGCTTNNTg > 2:46047/1‑156 (MQ=255) gTGAGCCGACCATTAAACAATCGGTAAGATGGAAGAACGCACTCGGCGAACTAAATGCCAATCTGGATATCAGTATTGCCGACCCAGCCAAATCTTCATCATCCACAAACAAAGATATCAAATCGCTCAATTTTGATGTGAAGTTACCGCTTAATg < 1:46047/156‑1 (MQ=255) | GATAAGTTAACAAAAGGGAATCAGCAACTCGGTAGTGGTGAGTGGTCATTGATTGCTGAATCTATTGATCCCTCAGCAGTGCGCCAATTTATCATCCAGTATAACATTGCGATGCAGAAGCAGCTTGCTGCACACCCTGAGTTAGCAAACGATGAAGTTGCTCTGCAAGAAGTGAATGCTGCATTGTTCAAAGAGTATTTACCGTTATTACAAAAAAGTGAGCCGACCATTAAACAACCGGTAAGATGGAAGAACGCACTCGGCGAACTAAATGCCAATCTGGATATCAGTATTGCCGACCCAGCCAAATCTTCATCATCCACAAACAAAGATATCAAATCGCTCAATTTTGATGTGAAGTTACCGCTTAATGTCGTCACAGAA > NC_000913/4045015‑4045398 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |