| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,843,293 | C→T | G166D (GGC→GAC) | adeQ ← | adenine transporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,843,293 | 0 | C | T | 93.8% | 34.8 / ‑6.5 | 17 | G166D (GGC→GAC) | adeQ | adenine transporter |
| Reads supporting (aligned to +/- strand): ref base C (1/0); new base T (10/5); total (11/6) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GGAATGGAATAGACGCCGCTAAAATGAACATCACCGAAAAATAATCCACAGCAAGACGTCACCACAATAGAAACCAGCACCGCGGCATGAAAATGACGTGATGACAACACGGTTATAATAAAAAACCCTAAAATACCTAACAACACGCCGTGAGAACTTAAATCGCCAATCATCACCAGCGTGTCTTTATTGGCGACAATAACGCCAGTATTTTTTAATCCCATTAAGGCGATAAATAATCCAATTCCGCTGGTGATACCAATACGTAAACTTAAGGGAATGTTGGAGATCATCCAGTACCGGATACGAAACAGCGTGAGCAAAAATAGTCCAACTGCGCCCCAGAATATTGCGCCCATCCCGGTCTGCCAGGAGATGCCCATCGCCCCCACGACCACGAAGGCAAAGAAGGCGTTCAGCCCCATTGCCGGAGCCAGCGC > NC_000913/3843089‑3843528 | ggaatggaatAGACGCCGCTAAAATGAACATCACCGAAAAATAATCCACAGCAAGACGTCACCACAATAGAAACCAGCACCGCGGCATGAAAATGACGTGATGACAACACGGTTATAATAAAAAACCCTAAAATACCTAACAACACGCCGTGAGAACTTAAATCGCCAATCATCACCAGCGTGTCTTTATTGGCGACAATAACGTCAGTATTTTTTAATCCCATTAAGGCGATAAATAATCCAATTCCGCt > 1:16859/1‑251 (MQ=255) cNAAAAATAATCCACAGCAAGACGTCACCACAATAGAAACCAGCACCGCGGCATGACAATGACGTGATGACAACACGGTTATAATAAAAAACCCTAAAATACCTAACAACACGCCGTGAGAACTTAAATCGCCAATCATCACCAGCGTGTCTTTATTGGCGACAATAACGTCAGTATTTTTTAATCCCATTAAGGCGATAAATAATCCAATTCCGCTGGTGATACCAATACGTAAACTTAAGTGAATGTTg > 1:171699/1‑251 (MQ=255) cacaGCAAGACGTCACCACAATAGAAACCAGCACCGCGGCATGAAAATGACGTGATGACACCAAGGTTATAATAAAAAACCCTAAAATACCTAACAACACGCCGTGAGACCTTAAATAGCCAATCATAACCAGCGTGTCTTTATTGGCGACAATAACGTCAGTATTTTTTAATCCCATTACGGCGATAAATAATCCAATTCCGCTGGGGATACCAATCCGTAACCTTAAGGGAATGTTGgag > 1:121745/1‑242 (MQ=255) caccacAATAGAAACCAGCACCGCGGCATGAAAATGACGTGATGACAACACGGTTATAATAAAAAACCCTAAAATACCTAACAACACGCCGTGAGAACTTAAATCGCCAATCATCACCAGCGTGTCTTTATTGGCGACAATAACGTCAGTATTTTTTAATCCCATTAAGGCGATAAATAATCCAATTCCGCTGGTGATACCAATACGTAAACTTAAGGGAATGTTGGAGATCATCCAGTACCGGATACGa > 1:51242/1‑250 (MQ=255) aaGAAACCAGCACCGCGGCATGAAAATGCCGTGATGACAACCCGGTTATAATAAAAAACCCTAAAATCCCTAACAACACGCCGTGAGAACTTAAATCGCCAATCATCACCAGCGTGTCTTTATTGGCGACAATAACGTCAGTATTTTTTACTCCCATTAAGGCGATAAATAATCCAATTCCGCTGGTGATACCAATACGTAACCTTAAGGGAATGTTGGAGATCATCCAGTACCGGATACGAAACAGCGTg < 1:4752/250‑1 (MQ=255) aCCGCGGCATGAAAATGACGTGATGACAACACGGTTATAATAAAAAACCCTAAAATACCTAACCACACGCCGTGAGAACTTAAATCGCCAATCATCACCAGCGTGTCTTTATTGGCGCCAATAACGTCAGTATTTTTTAATCCCATTAAGGCGATAAATAATCCAATTCCGCTGGTGATACCAATACGTAAACTTAAGGGAATGTTGGAGATCATCCAGTACCGGATACGAAACAGCGTGAGCAAAAAt > 1:162745/1‑249 (MQ=255) cGTGATGACAACACGGTTATAATAAAAAACCCTAAAATAACTAACAACACGCCGTGAGAACTTAAATCGCCAATCATCACCAGAGTGTCTTTCTTGGCGACAATAACGTCAGTATTTTTTAATCCCATTAAGGCGATAAATAATACAACTCCGCTGGTGATACCAATACGTAAACTTAAGGGAATGTTGGAGATCATCCAGTACCGGATACGAAACAGCGTGAGCAAAAATAGTCCAACTGCGCCCCAGa > 1:222994/1‑250 (MQ=255) gatgaCAACACGGTTATAATAAAAAACCCTAAAATACCTAACAACACGCCGTGAGAACTTCACTCGCCTATCATCACCAGCGAGTCTTTATTGGCAACTTTACCGCCAGTATTTTTTAATACCATTAAGGCGATAAATAATCCAATTCCGATGGTGATACCAATACGAAAACTTAAGGGAATGTTGGAGAGCATCCAGTCCCGGTTACGACTCAGCGTGCGCAAAATTCGTCCATCTGCGccatatcgga > 1:33891/1‑242 (MQ=255) caacaCGGTTATAATAAAAAACCCAAAAATACCTAACAACACGCCGTAAGAACTTAAATCGCCAATCAGCACCAGCCTGTCTTTATTGGCGGCAATAACGACAGTATTTTTGAGTCGCATTAAGGCGATAAATAATCCAATTCCGCTGGTg < 1:84022/151‑1 (MQ=255) aataaAAAACCCTAAAATACCTAACAACACGCCGTGAGAACTTAAATCGCCAATCATCACCAGCGTGTCTTTATTGGCGACAATAACGTCAGTATTTTTTAATCCCATTAAGGCGATAAATAATCCAATTCCGCTGGTGATACCAATACGTAAACTTAAGGGAATGTTGGAGATCATCCAGTACCGGATACGAAACAGCGTGAGCAAAAATAGTCCAACTGCGccc > 1:86595/1‑226 (MQ=255) ataaAAAACCCTAAAATACCTAACAACACGCCGTGAGAACTTAAATCGCCACTCATAACCAGCGTGTTTTTATTGGCGACAATAACGTCAGTATTTTTTAATCACATTAAGGCGATCAATAATCCAATTACGCTGGTGATACCATTACGTAAACTTAAGGGAATGTTGGAGATCATCCAGTACCGGATACGAAACAGCGTGAGCAAAAATAGTCCAACTGCGCCCCAGCATATTGCGCCCATCCCGGTCTg > 1:215400/1‑251 (MQ=255) aaaaaCCCTAAAATCCCTAACAACAAGCCGTGAGAACTTAAATCGCCAATCATCAACCGCGTGTCTTTATTGGAGACAATAACGTCAGTATTTTTTAATCCCATTAAGGCGATAAATAATCCAATTCCGCTGGAGATACCAATCCGTAAACTTAAGGGCATGTTGGAGATCATCCAGTACCGGATACGAAACAGCGTGAg > 1:80767/1‑200 (MQ=255) aaTACCTAACAACACGCCGTGAGAACTTAAATCGCCAATCATCACCAGCGTGTCTTTATTGGCGACAATAACGTCAGTATTTTTTAATCCCATTAAGGCGATAAATAATCCAATTCCGCGGGTGATACCAATACGTAAACTAAAGGGAATGTTGGAGATCATCCAGTACCGTATATGAAACAGCGTGAGCAAAAATAGTCCAACTGCGCCCCAGAAGATTTCGCCCATCCCGGTCTGCCAGGAGATGCCCa < 1:194678/251‑1 (MQ=255) ncancaCNANNGNNTCTNTATTGGCGACAATAACGTCAGNNTTTTTTAATNCCAGTAAGGCGATAAATAATCCAATGCCGCTGGTGATACCAATACGTAAACTTNAGGGAATGTNNGANAGCTGNCNNNANNNGANACGAAACATCGTGAGCAAANATNNTCCAACNGCGCCCCAGAATATTGCGCCCATccc < 2:51242/192‑1 (MQ=255) caCCAGCGTGTCTTTATTGGCGACAATAACGTCAGTATTTTTTAATCCCATTAAGGCGATAAATAATCCAATTCCGCTGGTGATACCAATACGTAAACTTAAGGGAATGTTGGAGATCATCCAGTACCGGATACGAAACAGCGTGAGCAAAAATAGTc < 1:34472/158‑1 (MQ=255) aTTGGCGACAATAACGTCAGTATTTTTTAAGCCCATTAAGGCGATAAATAATCCAATTCCGCTGGTGATACCAATACGTAAACTTAAGGGAATGTTGGAGAACATCCAGTACCGGATACGAAACAGCGTGAGCAAAAATAGTCCAACTGCGCCCCAGAATATTGCGCCCATCCCGGTCTGCCAGGAGATGCCCATCGCCCCCACGACCACGAAGGCAAAGAAGGCGTTCAGCCCCATTGCCGGATCCAgc < 1:214390/250‑1 (MQ=255) gACAATAACGTCAGTATTTTTTAATACCATTAAGGCGCTCAATAATCCACTTCCGCTGGTGATACAACTACGTAAACTTAAGGGAATGTTGGAGATCATCCAGTACCGGATACGACACAGCGTGAGCAACAATAGTCCAACTGCGCCCCAGAATATTGCGCCCATCCCGGTCTGCCAGGAGATGCCCATCGCCCCCACGACCACGAAGGCAAAGAAGGCGTTCAGCCCCATTGCCGGAGGCAgcgc > 1:180483/1‑246 (MQ=255) | GGAATGGAATAGACGCCGCTAAAATGAACATCACCGAAAAATAATCCACAGCAAGACGTCACCACAATAGAAACCAGCACCGCGGCATGAAAATGACGTGATGACAACACGGTTATAATAAAAAACCCTAAAATACCTAACAACACGCCGTGAGAACTTAAATCGCCAATCATCACCAGCGTGTCTTTATTGGCGACAATAACGCCAGTATTTTTTAATCCCATTAAGGCGATAAATAATCCAATTCCGCTGGTGATACCAATACGTAAACTTAAGGGAATGTTGGAGATCATCCAGTACCGGATACGAAACAGCGTGAGCAAAAATAGTCCAACTGCGCCCCAGAATATTGCGCCCATCCCGGTCTGCCAGGAGATGCCCATCGCCCCCACGACCACGAAGGCAAAGAAGGCGTTCAGCCCCATTGCCGGAGCCAGCGC > NC_000913/3843089‑3843528 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |