| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,170,257 | G→A | A144T (GCT→ACT) | qseB → | DNA‑binding transcriptional activator QseB |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,170,257 | 0 | G | A | 90.0% | 21.3 / NA | 10 | A144T (GCT→ACT) | qseB | DNA‑binding transcriptional activator QseB |
| Reads supporting (aligned to +/- strand): ref base G (0/0); major base A (5/4); minor base C (1/0); total (6/4) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GAGCCGGTACTGATCCTGACCGCGCGCGATGCGCTGGCGGAACGTGTAGAAGGGCTGCGTCTGGGAGCTGACGATTATCTGTGTAAACCTTTTGCGTTGATAGAAGTCGCCGCCAGGCTGGAAGCTCTGATGCGCCGAACCAACGGCCAGGCCAGCAACGAGCTGCGCCACGGTAACGTCATGCTCGACCCCGGCAAACGTATCGCCACGCTGGCTGGCGAACCCTTAACACTGAAACCAAAAGAATTTGCCCTGCTGGAATTACTGATGCGTAACGCTGGTCGGGTACTGTCGCGCAAACTGATTGAAGAGAAACTGTATACCTGGGACGAAGAGGTCACCAGTAATGCCGTTGAAGTGCATGTGCATCATCTGCGACGCAAACTCGGTAGTGATTTTATTCGTACCGTGCATGGTATTGGTTACACATTAGGTGAGAAATGAAATTTACCCAACG > NC_000913/3170044‑3170500 | gAGCCGGTACTGATCCTGACCGCGCGCGATGCGCTGGCGGAACGTGTAGAAGGGCTGCGTCTGGGAGCTGACGATTATCTGTGTAAACCTTTTGCGTTGATAGAAGTCGCCGCCAGGCTGGAAGCTCTGATGCGCCGAACCAACGGCCAGGCCAGCAACGAGCTGCGCCACGGTAACGTCATGCTCGACCCCGGCAAACGTATCGCCACGCTGACTGGCGAACCCTTAACACTGAAACCAAAAGAATTTGc < 1:173837/251‑1 (MQ=255) aGGGCTGCGTCTGGGAGCTGACGATTATCTGTTTAAACCTTTTGCGTTGATAGAAGTCGCCGCCAGGCTGGAAGCTCTGATGCGCCGAACCAACGGCCAGGCCAGCAACGAGCTGCGCCACGGTAACGTCATGCTCGACCCCGGCAAACGTATCGCCACGCTGACTGGCGAACCCTTAACACTGAAACCAAAAGAATTTGCCCTGCTGGAATTACTGATGCGTAACGCTGGTCGGGTACTGTCGCGCaaan < 1:134662/251‑2 (MQ=255) tGCGTTGATAGAAGTCGCCGCCAGGCTGGAAGCTCTGATGCGCCGAACCAACGGCCCGGCCAGCAACGAGCTGCGCCACGGTAACGTCATGCTCGACCCCGGCAAACGTATCGCCAAGCTGCCTGGCGAACCCTTAACACTGAAACCAAAAGAATTTGCCCTGCTGGAATTACTGATGCGTAACGCTGGTCGGGTACTGTCGCGCAAACTGATTGAAGAGAAACTGTATACCTGGGACGAAGAGGTCAcc > 1:118590/1‑250 (MQ=255) ncgcCGAACCAACGGCCAGGCCAGCAACAAGCTGCGCCACGGTAACGTCATGCTCGACCCCGGCAAACGTATCGCCACGCTGACTGGCGAACCCTTAACACTGAAACCAAAAg > 1:54250/2‑113 (MQ=255) ccagCAACGAGCTGCGCCACGGTAACGTCATGCTCGACCCCGGCAAACGTATCGCCACGCTGACTGGCGAACCCGTAACACTGAAACCAAAAGAATTTGCCCGGCTGGAATTACGGATGCGTAACGCTGGTCGGGTACTGTCGCGCAAACTGATTGAAGAGAAACTGTATACCTGGGACGAAGAGGTCACCAGTAATGCCGTTGAAGTGCATGTGCATCATCTTCGACGCAAACTCGGTAGTGAttt < 1:70888/247‑1 (MQ=255) gTAACGTCATGCTCGACCCCGGCAAACGTATCGCCACGCTGACTGGCGAACACTTAACACTGAAACCCAAAGAATTTGCCCTGCTGGAATTACTGATGCGTAACGCTGGTCGGGTACTGTCGCGCAAACTGATTGAAGAGAAACTGTATACCTGGGACGAAGAGGTCACCAGTAAt > 1:140544/1‑176 (MQ=255) ccccGGCAAACGTATCGCCACGCTGACTGGCGAACCCTTACCACTGAAACCAAAAGAATTTGCCCTGCTGGAATTACTGa > 1:103872/1‑80 (MQ=255) cGGCANCCGTANCNNCACGCTCACTGGCGAACCCNTAACACTGAAACCAANAGAANTTGCCntgntn > 2:92323/1‑66 (MQ=255) cGTATCGCCACGCTGACTGGCGAACCCTTAACACAGAAACCAAAAGAATTTGCCCGGCTGGAATTACTGATGCGGAACGCTGGTCGGGTACTGTCGCGCAAACTGATTGAAGAGAAACTGTATTCCGGGGACGAAGAGTTCACCAGTAATGCCGTTTAAGTGCAGGTACATCCGCTGCGACGCAGATTCAGTAGTGATATTATTCGTACCGTTCATGGGATTGGTCACACATTAGGTGAGATACGAAAttt < 1:206882/251‑1 (MQ=255) cACGCTGACTGGCGACCCCTTAACACTGAAACCAAAAGAATTTGCCCTGCTGGAATTACTGATGCGTAACGCTGGTCGGGTACTGTCGCGCAAACTGATTGAAGAGAAACTGTATACCTGGGACGAAGAGGTCACCAGTAATGCCGTTGAAGTGCATGTGCATCATCTGCGACGCAAACTCGGTAGTGATTTTATTCGTACCGTGCATGGTATTGGTTACACATTAGGTGAGAAATGAAATTTACCCAACg > 1:184691/1‑251 (MQ=255) | GAGCCGGTACTGATCCTGACCGCGCGCGATGCGCTGGCGGAACGTGTAGAAGGGCTGCGTCTGGGAGCTGACGATTATCTGTGTAAACCTTTTGCGTTGATAGAAGTCGCCGCCAGGCTGGAAGCTCTGATGCGCCGAACCAACGGCCAGGCCAGCAACGAGCTGCGCCACGGTAACGTCATGCTCGACCCCGGCAAACGTATCGCCACGCTGGCTGGCGAACCCTTAACACTGAAACCAAAAGAATTTGCCCTGCTGGAATTACTGATGCGTAACGCTGGTCGGGTACTGTCGCGCAAACTGATTGAAGAGAAACTGTATACCTGGGACGAAGAGGTCACCAGTAATGCCGTTGAAGTGCATGTGCATCATCTGCGACGCAAACTCGGTAGTGATTTTATTCGTACCGTGCATGGTATTGGTTACACATTAGGTGAGAAATGAAATTTACCCAACG > NC_000913/3170044‑3170500 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |