| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,138,318 | G→A | L69L (CTG→TTG) | gss ← | fused glutathionylspermidine amidase/glutathionylspermidine synthetase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,138,318 | 0 | G | A | 91.7% | 29.0 / ‑5.2 | 12 | L69L (CTG→TTG) | gss | fused glutathionylspermidine amidase/glutathionylspermidine synthetase |
| Reads supporting (aligned to +/- strand): ref base G (0/0); major base A (4/7); minor base C (1/0); total (5/7) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.17e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.41e-01 | |||||||||||
AAGAAGCGCACCCGCGACCGGCGCACGCGGCGAGCCGTTAGGAAATGCCTGCAATGGCAGGATGTTGTCATTAACCACTTCTCGCAGGAAGCGCAGCGAGAAAATCTCCCACGCCATACCCACGTCAGTAAAGACCACACCGTAATTCAGAAAGAGAAAACGGCGAGCAAATTCAACGCATTGCCACTTGTGGCCCATATATTCGTCGTCGATATAGCTACGGAATACGGCGTCATCTTCGTATTCCTGCGGATCGAGAGAACTGTAATCTGAAGAGTAGATTGCTACCCCACCTGGGGCGTAGCCCAATAATGTCCCGAACGGGGCATCCTGGCTGGTCGTTCCTTTGCTCATCACTTTACCTTTAACAATACAACCTAAGC > NC_000913/3138169‑3138551 | aagaagCGCACCCGCGACCGGCGCACGCGGCGAGCCGTTAGGAAATGACTGCACTGGCAGGCTGTTGTCATTACACACTTCTCGAACGCAGCGCAGCGAGCAAATCTCACACGCCATACCCACGTCCGCAAAGACCCCACCGTAATTCACAAAGAGAAAACGGCGAGCAAATTCAACGCATCACCACTTGTGGCCCATATCTTCGTCGTCAATATAGCTACGGAATACGCCGTCATCTTCGTATTCCTGCg > 1:107709/1‑251 (MQ=255) gcgAGCCGTTAGGAAATGCCTGCAATGGCAGGATGTTGTCATTAACCACTTCTCGCAGGAAGCGCAGCGAGAAAATCTCCCACGCCATACCCACGTCAGTAAAGACCACACCGTAATTCAAAAAGAGAAAACGGCGAGCAAATTCAACGCATTGCCACTTGTGGCCCATATATTCGTCGTCGATATAGCTACGGAATACGGCGTCATCTTCGTATTCCTGCGGATCGAGAGAACTGTAATCTGAAGAGt > 1:116443/1‑249 (MQ=255) aGGAAATGCCTGCAATGGCAGGATGTTGTCATTAACCCCTTCTCGCAGGAGGAGCAGCGAGAAAATCTCCCACGCCATACCCACGTCAGTAAAGACCACACCGTAATTCAAAAAGAGAAAACGGCGAGCAAATTCAACGCATTGCCACTTGTGGCCCATATATTCGTCGTCGATATAGCTACGGAATACGGCGTCATCTTCGTATTCCTGCGGATCGAGAGAACTGTAATCTGAAGAGTAGATTGCTAccn < 1:130871/251‑2 (MQ=255) gtCATTAACCACTTCTCGCAGGAAGCGCAGCGAGAAAACCTCCCACGCCATGCCCACGTCAGTAAAGACCACACCGTAATTCAAAAAGAGAAAACGGCGAGCAAATTCAACGCATTGCCACTTGTGGCCCATATATTCGTCGTCGATATAGCTACGGAATACGGCGTCATCTGCGTATTCCGGCGGATCGAGAGAACTGTAATCTGAAGAGTAGATTGCTACCCCACCTGGGGCGTAGCCCAATAATGTc < 1:203468/250‑1 (MQ=255) ncAGGAAGCGCAGCGAGAAAATCTCCCACGCCATACCCACGTCAGTAAAGACCACACCGTAATTCAAAAAGAGAAAAc > 1:137451/2‑78 (MQ=255) gCAGGAAGCGCAGCGAGAAAATCTCCCACGCCATACCCACGTCAGTAAAGACCACACCGTAATTCAAAAAGAGAAAAc < 2:137451/78‑1 (MQ=255) cAGCGAGAAAATCTCCCACGCCATACCCACGTCAGTAAAGACCACACCGAAATTAAAAAAGAGAAAACGGCGAGCAAATTCAACGCATTGCCCCTTGTGGCCCATATATTCGTCGTCGATAAAGCTACGGAATCCGGCGTCCTCTTCGTATTCCTGCgg > 1:200699/1‑159 (MQ=255) cGAGAAAATCTCCCACGCCATACCCACGTCAGTAAAGACCACACCGTAATTCAAAAAGAGAAAACGGCGAGCAAATTCAACGCATTGCCACTTGTGGCCCATATATTCGTCGTCGATATAGCTACGGAATACGGCGTCATCTTCGTATTCCTGCGGATCGAGAGAACTGTAATCTGAAGAGTAGATTGCTACCCCACCTGGGGCGTAGCCCAATAATGTCCCGAACGGGGCATCctgn < 1:53618/238‑2 (MQ=255) cccACGNNATACCCACGTCAGTAAAGACCGCACCGTAATTCAAAAAGAGAAAACGGCGAGCAAATTCAACGCATTGCCACTTGTGGCCCATATAtt < 2:713/96‑1 (MQ=255) ccATACCCACGTCAGTAAAGACCACACCGTAATTCAAAAAGAGAAAACGGCGAGCAAATTCAACGCATTGCCACTTGTggn < 1:129353/81‑2 (MQ=255) ccATACCCACGTCAGTAAAGACCACACCGTAATTCAAAAAGAGAAAACGGCGAGCAAATTCAACGCATTGCCACTTGTGGc > 2:129353/1‑81 (MQ=255) gACCACACCGTAATTCAAAAAGAGAAAACGGCGAGCAAATTCAACGCATTGCCACTTGTGGCCCATATATTCGTCGTCGATATAGCTACGGAATACGGCGTCATCTTCGTATTCCTGCGGATCGAGAGAACTGTAATCTGAAGAGTAGATTGCTACCCCACCTGGGGCGTAGCCCAATAATGTCCCGAACGGGGCATCCTGGCTGGTCGTTCCTTTGCTCATCACTTTACCTTTAACAATACAACCTAANc < 1:170049/251‑1 (MQ=255) | AAGAAGCGCACCCGCGACCGGCGCACGCGGCGAGCCGTTAGGAAATGCCTGCAATGGCAGGATGTTGTCATTAACCACTTCTCGCAGGAAGCGCAGCGAGAAAATCTCCCACGCCATACCCACGTCAGTAAAGACCACACCGTAATTCAGAAAGAGAAAACGGCGAGCAAATTCAACGCATTGCCACTTGTGGCCCATATATTCGTCGTCGATATAGCTACGGAATACGGCGTCATCTTCGTATTCCTGCGGATCGAGAGAACTGTAATCTGAAGAGTAGATTGCTACCCCACCTGGGGCGTAGCCCAATAATGTCCCGAACGGGGCATCCTGGCTGGTCGTTCCTTTGCTCATCACTTTACCTTTAACAATACAACCTAAGC > NC_000913/3138169‑3138551 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |