| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,122,355 | G→A | A484V (GCC→GTC) | glcB ← | malate synthase G |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,122,355 | 0 | G | A | 85.7% | 11.9 / ‑5.8 | 8 | A484V (GCC→GTC) | glcB | malate synthase G |
| Reads supporting (aligned to +/- strand): ref base G (0/1); new base A (3/3); total (4/4) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.53e-01 | |||||||||||
GTTGGTGACGGAACCCAGGCTGTGTTTGCCCCGGCACGCAGTTGGTCGCCCTTCTGGCTGTACATGTCTGCCATCAGGTCCGGCATTGCCCACATGCCTTTACCAATTTGCGCTTTACCGCGCAGCCCACAGAACAGACCGGAAAGCACGTTATTACGCTCGTAGGCTTTGATCCAAGGCGTCGATTTCATCTGATTTTTACGCAGCATCGGGCCAGCTTCCATCACCGAATGCATTTCATCGCCGGTACGGTCGAGGAAACCGGTATTGATGAACGCCACGCGGTTGCGCGCCTGAGCGATACAGCTACGCAAGTTCAGCGAGGTCCGACGTTCTTCATCCATAATGCCCATTTTCAGGGTATTCGGTGCCATACCGAGCATTGTC > NC_000913/3122190‑3122576 | gTTGGAGACGGAACCCAGGATGGGTTTGCCCCGGCAGGCAGTTGGTCGCCATTATGGCTGTACATGTCTGCCATCAGGTCCGGCATTGCCCACATGCCTTTACCAATTTGCGCTTTACCGCGAAGACCACAGAACAGACAGGAAAGCACGTTAATACGCTCGTAGACTTTGATCCAAGGCGTCGATTTCATCTGATTTTTACGCAGCATCGGGCCAGCTTCCATCACCGAATGCATTTCATCGACGGTa > 1:1565/1‑249 (MQ=255) agggcnNGCNNNGCNNACATGCCTTTACCAATTTGCGCTNTACCGCGCAGCCCACAGAACAGACCGGAANGNANGTTANNACGNTCGTAGACTTNGATCCAAGGCGTCGATTTCATCTGATTTTTACGCAGCATCGGGCCAGCNTNCATCACCGAATGCATTTCATCGCCGGTACGGNCGATGAAACCGGTATTGATGAACCNCACGNNGTNgnnnnnnnnnnn > 2:162963/5‑213 (MQ=255) ggTCCGGCATTGCCCACATGCCTTTACTAATTTGCGCTTTACCGCGCAGCCCACAGAACAGACCGGAAAGCACGTTATTACGCTCGTAGACTTTGATCCAAGGCGTCGATTTCATCTGATTTTTACGCAGCATCGGGCCAGCTTCCATCACCGAATGCATTTCATCg < 1:76192/167‑1 (MQ=255) ttGCGCTTTACCGCGCAGCCCACAGAACAGACCGGAAAGCACGTTATTACGCTCGTAGACTTTGATCCAAGGCGTCGATTTCATCTGATTTTTACGCAGCATCGGGCCAGCTTCCATCACCGAATGCATTTCATCGCCGGTACGGTCGAGGAAACCGGTATTGATGAACGCCACGCGGTTGCGCGCCTGAGCGATACAGCTACGCAAGTTCAgn < 1:131338/214‑2 (MQ=255) ttGCGCTTTACCGCGCAGCCCACAGAACAGACCGGAAAGCACGTTATTACGCTCGTAGACTTTGATCCAAGGCGTCGATTTCATCTGATTTTTACGCAGCATCGGGCCAGCTTCCATCACCGAATGCATTTCANCGcn > 2:131338/1‑137 (MQ=255) ccGCGCAGCCCACGGAACAGACCGGCAGGCACGCTATTACGCTCGTAGCCTTTGATCCACGGCGTCGATTTCATCTGATTTTTACGCAGCATCGGGCCAGCTTCCATCACCGCATGCATTTCATCGCCGGTACGGTCGAGGAAACCGGTATtgatga > 1:70143/1‑157 (MQ=255) cccACAGAACAGACCGGAAAGCACGGTATGACGCTCGTAGGCTGTTATCCAAGGc < 1:59145/55‑1 (MQ=255) gaCCGGAAAGCACGTTATTACGCTCGTAGACTTTGATCCAAGGCGTCGATTTCATCTGATTTTTACGCAGCATCGGGCCAGCTTCCATCACCGAATGCATTTCATCGCCGGTACGGTCGATGAAACCGGTATTGATGAACGCCACGCGGGTGCGCGCCTGAGCGATACAGCTACGCAAGTTCAGCGAGGTCCGACGTTCTTCATCCATAATGCCCATTTTCAGGGTATTCGGTGCCATACCGAGCATTGtc < 1:162963/251‑1 (MQ=255) | GTTGGTGACGGAACCCAGGCTGTGTTTGCCCCGGCACGCAGTTGGTCGCCCTTCTGGCTGTACATGTCTGCCATCAGGTCCGGCATTGCCCACATGCCTTTACCAATTTGCGCTTTACCGCGCAGCCCACAGAACAGACCGGAAAGCACGTTATTACGCTCGTAGGCTTTGATCCAAGGCGTCGATTTCATCTGATTTTTACGCAGCATCGGGCCAGCTTCCATCACCGAATGCATTTCATCGCCGGTACGGTCGAGGAAACCGGTATTGATGAACGCCACGCGGTTGCGCGCCTGAGCGATACAGCTACGCAAGTTCAGCGAGGTCCGACGTTCTTCATCCATAATGCCCATTTTCAGGGTATTCGGTGCCATACCGAGCATTGTC > NC_000913/3122190‑3122576 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |