| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,110,471 | G→A | intergenic (+30/+119) | pheV → / ← yghD | tRNA‑Phe/putative type II secretion system M‑type protein YghD |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,110,471 | 0 | G | A | 91.7% | 21.4 / NA | 12 | intergenic (+30/+119) | pheV/yghD | tRNA‑Phe/putative type II secretion system M‑type protein YghD |
| Reads supporting (aligned to +/- strand): ref base G (0/0); major base A (6/5); minor base C (1/0); total (7/5) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.85e-01 | |||||||||||
GCTTTCCGCCGCCTGGACCGCCTGGTTTGCCTGACAATGCGTGCAATATCGGCAAAGTGATGATAGATTGTGCAGTCTGCAGTAAATTGAAGAAATTTGATTGACGAGACGAGGCGAATCAGGTTTAATGCGCCCCGTTGCCCGGATAGCTCAGTCGGTAGAGCAGGGGATTGAAAATCCCCGTGTCCTTGGTTCGATTCCGAGTCCGGGCACCACTAATTCTTAAGAACCCGCCCACAAGGCGGGTTTTTGCTTTTGGATCTGACAATAACCTTCACGAAAAAAATTAGCTTATAAAGTCTGGGGGAATTACTCTCGCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCGCTGCACATTCACCATCCCAGGCTTCT‑‑‑CAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATATTTTTC > NC_000913/3110227‑3110685 | gCTTTCCGCCGCCTGGACCGCCTGGTTTGCCTGACAATGCGTGCAATATCGGCAAAGTGATGATAGATTGTGCCGTCTGCAGTAAATTGAAGAAATTTGCTTGACGAGACGAGGCGAATCCGGTTTAATGCGCCCCGTTGCCCGGATAGCTCAGTCAGTAGAGCAGTGGATTGAAAATCCCCGTGTCCTTGGTTCGATTCCGAGTCCGAGCACCACTAATTCTTAAGAACCCGCCCACAAGGCGAGttttt > 1:69645/1‑251 (MQ=38) ngccgccTGGACCGCCTGGTTTGCCTGACAATGCGTGCAATATCGGCAAAGTGATGATAGATTGTGCAGTCTGCAGTAAATTGAAGAAATTTGATTGACGAGACGAGGCGAATCAGGTTTAATGCGCCCCGTTGCCCGGATAGCTCAGTCGGTAGAGCAGGGGATTGAAAATCCCCGTGTCCTTGGTTCGATTCCGAGTCCGGGCACCACTAATTCTTAAGAACCCGCCCCCAAGGCGAGTTTTTGCtttt > 1:135849/2‑251 (MQ=255) gCCTGACAATGCGTGCAATATCGGCAAAGTGATGATAGATTGTGCAGTCTGCAGTAAATTGAAGAAATTGGATTGACGAGACGAGGCGAATCAGGTTTAATGCGCCCCGGTGCCCGGATAGCTCAGTCGGTAGAGCAGGGGATTGAAAATCCCCGTGTCCTTGGTTCGATGCCGAGTCCGGGCACCACTAATTCTTAAGAACCCGCCCACAAGGCGAGTTTTTGCTTTTGGATCTGACAATAACCTTCAc < 1:119083/250‑1 (MQ=255) gTCTGCAGTAAATTGAAGAAATTTGATTGACGAGACGAGGCGAATCAGGTTTAATGCGCCCCGTTCACCGAATAGCTCTGTCGGTGGAGCCCGGGATTGAACATCCCCGTGTCCTTGGTTCGCTTCCGAGTCCGGGCACCACTAATTCTTAAGAACCCGCCAACAAGGCGAGTTTTTGCt > 1:199373/1‑180 (MQ=255) aaTTTGATTGACGAGACGAGGCGAATCAGGTTTAATGCGCCCCGTTGCCCGGATAGCACAGACGGTAGAGAAGGGGATTGAAAATCCCCGTGTCCTTGGTTCGATTCCGAGTCCGGGCACCAATACTTCTTAAGAACCCGCACACAAGACGAGATTTGGCTTTTGGCTCTGACAATAAACTTCACGAAAAAAATTAGCTTATAAAGTCTGGGGGAATTACTCTCGCCACGTTAATGAGAGTAATTTTATTg > 1:210720/1‑251 (MQ=25) aTGCGCTCCGGTGCCCGGATAGCTCAGTCGGTAGAGCAGGGGATTGAAAATCCCCGTGTCCTGGGTTCGATTCCGAGTCCGGGCACCAGTAATGCTTAAGAACCCGCCCACAAGGCGAGTTTTTTCTTTTGGTGCTGACAATAACCTTCACGAAAAAAATTAGCTTATAAAGTCTGGGGGAATTAc < 1:113377/186‑1 (MQ=25) cTTGGTTCGATTCCGAGTCCGGGCACCACTAATTCTTAAGAACCCGCCCACAAGGCGAGTTTTTGCTTTTGGATCTGACAATAACCTTCACGAAAAAAATTAGCTTATAAAGTCTGGGGGAATTACTCTCGCCACGTTAATGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCGCTGCACATTCACCATCCCAggn < 1:55939/222‑2 (MQ=255) cGAGTCCGGGCACCACTAATTCTTAAGAACCCGCCCACAAGGCGAGTTTTTGCTTTTGGATCTGACAATAACCTTCACGAAAAAAATTAGCTTATAAAGTCTGGGGGAATTACTCTCGCCACGTTAATGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCGCTGCACATTCACCATCCCAGGCTTCTCAGCAGCAGCACTGACATCAATTTGTGTCACCCGCAgc > 1:29417/1‑251 (MQ=255) cGGGCACCACTAATTCTTAAGAGCCCGCCCACAAGGCTAGTTTTTGCTTTTCGATCTGACAATAATCTGCACGAAAAAAACTAGCTTATAAAGTCTGGAGGAATTACTCTCGCCACGTTACTGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTGCCCCCGTCCAAACTCCAGCCGCTGCACATTCACCATCCCATGCTTCT‑‑‑CAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAtttt < 1:16622/251‑1 (MQ=255) gCACAACTAATTCTTAAGACCCCGCCCACAAGGCGAGTTTTTGCTTTTGGATCTGACAATAACCTTCACGCAAACAATTAGCTTATAAAGTCTGGGGGAATTACTCTCGCCACGTTAATGAGAGTAATTTTATTGCTATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCGCTGCACATTCACCATCCCAGGCTTCT‑‑‑CAGCAGCACTGACATCACTTTGTGTCACCCGCAACGCATATTTTTc > 1:93818/1‑250 (MQ=255) accacTAATTCTTAAGAACCCGCCCACAAGGCGAGTTTTTACTTTTGGATCTGACAATAACCTTCACGAAAAAAATTAGCTTATAAAGTCTGGGGGAATTACTCTCGCCACGTTAATGAGAGTAAGTGTATTGATATTAATCTCCTGATGCTTTACCCCCGTCCAAACTCCAGCCGCTGCACATTCAcc < 1:216073/189‑1 (MQ=255) gCCCACAAGGCGCGTTTTTGCTTTTGGATCTGACAATAACCTTCCCGAGAAAAATTCGCTTATAACGGCTGGGGGaact > 1:222942/1‑77 (MQ=255) | GCTTTCCGCCGCCTGGACCGCCTGGTTTGCCTGACAATGCGTGCAATATCGGCAAAGTGATGATAGATTGTGCAGTCTGCAGTAAATTGAAGAAATTTGATTGACGAGACGAGGCGAATCAGGTTTAATGCGCCCCGTTGCCCGGATAGCTCAGTCGGTAGAGCAGGGGATTGAAAATCCCCGTGTCCTTGGTTCGATTCCGAGTCCGGGCACCACTAATTCTTAAGAACCCGCCCACAAGGCGGGTTTTTGCTTTTGGATCTGACAATAACCTTCACGAAAAAAATTAGCTTATAAAGTCTGGGGGAATTACTCTCGCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCGCTGCACATTCACCATCCCAGGCTTCT‑‑‑CAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATATTTTTC > NC_000913/3110227‑3110685 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |