| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,014,744 | G→A | A105V (GCG→GTG) | yqeC ← | uncharacterized protein YqeC |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,014,744 | 0 | G | A | 91.7% | 24.3 / NA | 12 | A105V (GCG→GTG) | yqeC | uncharacterized protein YqeC |
| Reads supporting (aligned to +/- strand): ref base G (0/0); major base A (5/6); minor base C (1/0); total (6/6) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.41e-01 | |||||||||||
TAACCCGGTAATATCAGCAAACTGCGACCAGCGATGGACATTTTCTGTGCTCACTTTCGCGCCCAAAGTATGTCCTCCCATCACAGCAATCACGCAGCAACTGCTTTTGGGTATGCAAGGTTCGTGCTCATCAGGCGCTTTTAACGGCATTCCACGCGAGCCATCTGCTTCAATGAGAATTACGTCACACTCTGGTCGTTGCACCAGTGCATCAATCGCTTCTGGCGTAAATCCCTGCACTTTTCCCTGGTTCGCTTTCCAGCTGTGAAAACAAAATGAAATGGGGGATGTAAGAGACGCATGAGGAAGCATGGCGGGATCACGACAGAAAACCACGGGCCAGTGAGACGTTGGCATAAACATATGTGTCGTCGTCGTGATTAACACACGCCTGCCGCTAGCCTGGAGCAGTTCTGCCAGCCAAAAAAGCAAGCTGGTTTTCCCCCCAGCACCAACA > NC_000913/3014527‑3014983 | tAACCCGGTAATAGCAGCAAACTGCGAACAGCGATGGACATTTTCTGTGCTCACTTTCGCGCCCAAAGTATGTCCTCCCATCACAGCAATCACGCAGCAACTGCTTTTGGGTATGCAAGGTGCGTGCTCATCAGGCGCTTTTAACGGCATTCCACGCGAGCCATCTGCTGCAATGAGAATTACGTCACACTCTGGTCGTTGCACCAGTGCATCAATCACTTCTGGCGTAAATCCCTGCACTTTTCCCTgg < 1:186928/250‑1 (MQ=255) nccGGTAATATCAGCAAACTGCGACCAGCGATGGACATTTTCTGTGCTCACTTTCGCGCCCAAAGTATGTCCTCCCATCACAGCAATCACGCAGCAACTGCTTTTGGGTATGCAAGGTTCGTGCTCATCAGGCGCTTTTAACGGCATTCCACGCGAGCCATCTGCTTCAATGAGAATTACGTCACACTCTGGTCGTTGCACCAGTGCATCAATCACTTCTGGCGTAAATCCCTGCACTTTTCCCTGGTTCg > 1:22908/2‑251 (MQ=255) tgtgCTCACTTTCGCGCCCAAAGTATGTCCTCCCATCACAGCAATCACGCAGCAACTGCTTTTGGGTATGCAAGGTGCGTGCTCATCAGGCGTTGTTGACGGCATTCCACGCGAGCCAGCGGCTTCAAGGAGGATTACGTCTCACTCTGGGCGTTGCACCAGTGCATCAATCACTTCTGGCGTAAATCCCt < 1:103489/191‑1 (MQ=255) cgcCCAAAGTATGTCCTCCCATCACAGCAATCACGCAGCAACTGCTTTTGGGTATGCAAGGTTCGTGCTCATCAGGCGCTTTTAACGGCATTCCACGCGAGCCATCTGCTTCAATGAGAATTACGTCACACTCTGGTCGTTGCACCAGTGCATCAATCACTTCTGGCGTAAATCCCTGCACTTTTCCCTGGTTCGCTTTCCAGCTGTGAAAACAAAATGAAATGGGGGATGTAAGAGACGCATGAGGAAGc < 1:18010/251‑1 (MQ=255) gcCCAAAGTATGTCCTCCCATCACAGCAATAACGCAGCAACTGCTTTTGGGTATGCAAGGTTCGTGCTCATCAGGCGCTTTTAACGGCATTCCACGCGAGCCCTCTGCTTCAATGAGAATTACGTCACACTCTGGTCGTTGCACCCGTGCATCAATCACTTCTGGCGTAAATCCCTGCACTTTTCCCTGGTTCGCTTTCCAGCTGTGAAAACAAAATGCAATGGGGGATGTAAGCGACGCATGAGGAAGc > 1:90223/1‑250 (MQ=255) gTATGTCCTCCCATCACAGCAATCACGCAGCAACTGCTTTTGGGTATGCAAGGTTCGTGCTCATAAGGCGCTTTTACCGGCATTCCACGAGCGCCATCTGCTTCCATGAGAATTACGTCCCACTCTGGTCGTTGCACCAGTGCATCAATCACTTCTGGCGTAAATCCCTGCACTTTTCCCTGGTTCGCTTTCCAGCTGTGAAAACAAAATGAAATGGGGGATGTAAGAGACGCATGAGGAAGCATGGCggg > 1:215603/1‑251 (MQ=255) gCTCATCAGGCGCTTTTAACGGCATTCCACGCGAGCCATCTGCTTCAATGAGAATTACGTCACACTCTGGTCGTTGCACCAGTGCATCAATCACTTCTGGCGTAAATCCCTGCACTTTTCCCTGGTTCGCTTTCCAGCTGTGAAAACAAAATGAAATGGGGGATGTAAGAGACGCATGAGGAAGCATGGCGGGATCACGACAGAAAACCACGGGCCAGTGAGACGTTGGCATAAACATAGGTgtcgtcgtc < 1:186749/251‑1 (MQ=255) catcaGGCGCTTTTAACAGCATTCCACGCGAGCCATCTGCTTCAATGAGAATTACGACACACTCTGGTCGTTGCACCAGTGCATCAATCACTTCTGGCGTAAATCCCTGCACTTTTCCCTGGTTCGCTTTCCAGCTGTGAAAACAAAATGAAATGGGGGATGTAAGAGACGCCTGAGGAAGCATGGCTGGATAACGACAGAAAACCACGGGCCAGTGAGACGTGGGCATAAAAATATGTGTCGTCGTCGTg > 1:49982/1‑251 (MQ=255) gaATTTCGTCACACGTTGGGCGTTGCACCAGGGCATCAATCATTTCTGGCTTAAATCCGTGCACTTTGCCCTGGTTCGCTTGCTAGCTGTGAAAATAAAATGAAATGGGGGATGTAAGAGACGCATGAGGAAGCa < 1:221148/135‑1 (MQ=255) ggTCGTTGCACCAGTGCATCAATCACTTCTGGCGTAAATCCCTGCACTTTTCCCTGGTTCGCTTTCCAGCTGTGAAAACAAAATGAACTGGGGGATGTAAGAGACGCATGAGGAAGCATGGCGGGATCACGACAGAAAACCCCGGGCCAGTGAGACGCTGGCATAAACATATGTGTCGTCGTCGTGATTAAAACACGCCTGCCGCTAGCCTGGAGCAGTTCTGCCAGCCAAAAAAGCCAGCTGGTTTTccc > 1:116904/1‑251 (MQ=255) cGTTGCACCAGTTCATCAATCACTTCTGGCGTAAATCCCTGCACTGTTCCCTGGTTCTCTTTCCAGCGGTGAAAACAAAATGAAATGGGGGATGTAAGAGACGCATGAg < 1:144488/109‑1 (MQ=255) tGCATCAATCCCTTCTGGCGTAAATCCCTGCACTTTTCAATGGTTCGCTTTCCAGATGTGAAAACACAATGAAATGGGGGATGAACGAGAAGCATGAGAAAGCATAGCGGGATCACGACAGAAAACCACGGGCCAGTAAGACGTTGGCATAAACATATATGTCGTCTACGTGATTAAACCACACCTGCCGCTAGCCTGGAGCAGGTCTGCCAGCCAAACAAGCAAGCTGGTATTCCCCCCAGCACccaca > 1:159575/1‑250 (MQ=255) | TAACCCGGTAATATCAGCAAACTGCGACCAGCGATGGACATTTTCTGTGCTCACTTTCGCGCCCAAAGTATGTCCTCCCATCACAGCAATCACGCAGCAACTGCTTTTGGGTATGCAAGGTTCGTGCTCATCAGGCGCTTTTAACGGCATTCCACGCGAGCCATCTGCTTCAATGAGAATTACGTCACACTCTGGTCGTTGCACCAGTGCATCAATCGCTTCTGGCGTAAATCCCTGCACTTTTCCCTGGTTCGCTTTCCAGCTGTGAAAACAAAATGAAATGGGGGATGTAAGAGACGCATGAGGAAGCATGGCGGGATCACGACAGAAAACCACGGGCCAGTGAGACGTTGGCATAAACATATGTGTCGTCGTCGTGATTAACACACGCCTGCCGCTAGCCTGGAGCAGTTCTGCCAGCCAAAAAAGCAAGCTGGTTTTCCCCCCAGCACCAACA > NC_000913/3014527‑3014983 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |