Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,777,983 C→T intergenic (+201/+163) ypjF → / ← ypjA toxin of the YpjF‑YfjZ toxin‑antitoxin system/adhesin‑like autotransporter YpjA

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,777,9830CT100.0% 29.7 / NA 12intergenic (+201/+163)ypjF/ypjAtoxin of the YpjF‑YfjZ toxin‑antitoxin system/adhesin‑like autotransporter YpjA
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base T (6/6);  total (6/6)

GCTCTACCGGCTTGCTAAAAACTAATGTGAAATAAACGCTTAAATACAGAGCAGACTGAAGGAAAGCAAAATGCTAATCTCATAGACGAAGAGACTCCCGCTGTAACCTCCCCTCCCCCGAAAAAACCTGACATTTTCTTTTAGGACCAACAATGGGACCAAAATGAAAATTGAACTGAAGATTACAATCAATTTAACAACAAGTTACACAACCAATTCAGACTCCGCCAGCCCACCAATCATGATTGGACGGTGTAAGGACAACACCAACAAAAACAGGAAGTTAGAAGTCTCAGCAAAACACCGACCAGACGGTGAGGAGACATAAAAGGATACGCAAAGGAGCCGCGGCTCCTGGTAACATGAAAGCCCACAGATGTGGGCTTTTTCGTTGATGGTCAGAACGACCAGTTCACACCAGCTACCGCGTTCCACGGG  >  NC_000913/2777748‑2778185
                                                                                                                                                                                                                                           |                                                                                                                                                                                                          
gcTCTACCGGCTTGCTAAAAACTAATGTGAAATAAACGCTTAAATACAGAGCAGACTGAAGGAAAGCAAAATGCTAATCTCATAGACGAAGAGACTCCCGCTGTAACCTCCCCTCCCCCGAAAAAACCTGACATTTTCTTTTAGGACCAACAATGGGACCAAAATGAAAATTGAACTGAAGATTACAATCAATTTAACAACAAGTTACACAACCAATTCAGACTCCGCCAGCCCATCAATCATGATTGGAc                                                                                                                                                                                             <  1:103526/251‑1 (MQ=255)
                 aaaaCTAATGTGAAATAAACGCTTAAATACAGAGCAGACTGAAGGAAAGCAAAATGCTAATCTCATAGACGAAGAGACTCCCGCTGTAACCTCCCCTCCCCCGAAAAAACCTGACATTTTCTTTTAGGACCAACAATGGGACCAAAATGAAAATTGAACTGAAGATTACAATCAATTTAACAACAAGTTACACATCCAATTCAGACTCCGCCAGCCCATCAATCATGATTGGACGGTGTAAGGACAacacn                                                                                                                                                                            <  1:19742/251‑2 (MQ=255)
                                                     gACTGAAGGAAAGCAAAATGCTAATCTCATAGACGAAGAGACTCCCGCTGTAACCTCCCCTCCCCCGAAAAAACCTGACATTTTCTTTTAGGACCAACAATGGGACCAAAATGAAAATTGAACTGAAGCTTACAATCAATTTAACAACAAGTTACACAACCAATTCAGACTCCGCCAGCCCATCAATCATGATTGGACGGTGTAAGGACAACACCAACAAAAACAGGAAGTTAGAAGTCTCAGCAAAacac                                                                                                                                        >  1:45953/1‑251 (MQ=255)
                                                                                     aCGAAGAGACTCCCGCTGTAACCTCCCCTCCCCCGAAAAAACCTGACATTTTCTTTTCGCACCAACACTGTGACCAAAATGAACATTGAACTGAAGCTTACAATCAATTTAACAAAAAGTTACACAACAAATTCAGACTCCGCCAACCTATCAATCATGATTGGACGGTGTAAGGACAACACCAACAAAAACAGGAAGTTAGAAGTCTCAGCAAAACACCAACCAGACGGTGAGGAGACATAAAAGGATAc                                                                                                        >  1:222262/1‑251 (MQ=255)
                                                                                           agaCTCCCGCTGTAACCTCCCCTCCCCCGAAAAAACCTGACATTTTCCTTTAGGACCAACAATGGTACCAAAATGAAAATTGAACTGAAGATTACAATCAAGTTAACAACAAGTTACACAACCAATTCAGACTCCTCCATCCCATCAATCATGATTGGACGGTGTAAGGACAACACCAACAAAAGCATTAATTTATAAGTCTCAGCAAAACTCCGACCAGACGGTTAGGAGTCATAAAAGCATACTCAAAg                                                                                                  <  1:88230/251‑1 (MQ=255)
                                                                                                cccGCTGTAACCTCCCCTCCCCCGAAAAAACCTGACATTTGCTTTTAGTACCAACAATTGGACCAAAATTAAAATTGAACTGAAGATTACAATCAAGTTAACAACAAGTTACGCAACCAATGCATACTCCGCCAGCCCATCAATCATGATTGGACGGTGTAAg                                                                                                                                                                                     <  1:106862/163‑1 (MQ=255)
                                                                                                                              ncTGACATTTTCTTTTAGGACCAACAATGGGACCAAAATGAAAATTGAACTGAAGATTACAATCAATTTAACAACAAGTTACACAACCAATTCAGACTCCGCCAGCCCATCAATCATGATTGGACGGTGTAAGGACAACACCAACAAAAACAGGAAGTTAGAAGTCTCAGCAAAACACCGACCAGACGGTGAGGAGACATAAAAGGATACGCAAAGGAGCCGCGGCTCCTGGTAACATGAAAGCCcat                                                                  >  1:39250/2‑247 (MQ=255)
                                                                                                                                 gACATTTTCTTTTAGGACCAACAATGGGACCAAAATGAAAATTGAACTGAAGATTACAATAAATTTAACAACACGTTACACAACAAATTCAGACTCCGCCAGCCCATCAATCATGCTTGGACGGTGTAAGGACAACACCAACAAAAACAGGAAGTTAGAAGTCTCAGCAAAACACCGACCAGACGGTGAGGAGACATAAAAGGATACGCAACGGAGCCGCGGCTCCTGGTAACATGAAAGCCCACAGAtgt                                                            >  1:120005/1‑251 (MQ=255)
                                                                                                                                   cATTTTCTTTTAGGACCAACAATGGGACCAAAATGAAAATTGAACTGAAGATTACAATCAATTTAACAACAAGTTACACAACCAATTCAGACTCCGCCAGCCCATCAATCATGATTGGACGGTGTAAGGACAACACCAACAAAAACAGGAAGTTAGAAGTCTCAGCAAAACACCGACCAGACGGTGAGGAGACATAAAAGGATACGCAAAGGAGCCGCGGCTCCTGGTAACATGAAAGCCCACAGATGTgg                                                          >  1:3803/1‑251 (MQ=255)
                                                                                                                                                                    tGAAAATTGAACTGAAGATTACAATCAATTTAACAACAAGTTACACAACCAATTCAGACTCCGCAAGCCAATCCATCATGATTGGACGGTGTCAGGACACAACCAACCAAAACCGGAAGATAGAAGTCTCAGAAAAACACCGACAAGACGGTGAGGAGACATAAAAGGATACGCACAAGAGCCGCGGCTCCTGGTAACATGAAAGCCCACAGATGTGGGCTTTTTCGTTGATGGTCAGAACGACCAGTTc                          >  1:143564/1‑250 (MQ=255)
                                                                                                                                                                                           atcaatTTAACAACAAGCTACACAAACAATGCAGGCGCCGCCAGCCCATCAATCATGATGGGACGGTGTAAGGACAACACCAACAAAAACAGGAAGATAGAAATCTCAGCAAAACACCGACCAGACGGCGAGGAGACAGAAAAGGATACGCAAAGGAGCCGCGGCTCCTTGTAACATGAAAGCCCACAGATGTTGGCTTTCTCGTTGATGGTCAGAACGACCAGTTCACACCAGCTACCGCGTTCCACggg  <  1:102655/251‑1 (MQ=255)
                                                                                                                                                                                                     caacaaGTTACACAACCAATTCAGACTCCGCCAGCCCATCAATCGTGATTGGACGGTGTAAGGACAACACCAACAAAAACAGGAAGTTAGAAGTCTCAGCAAAACACCGTCCAGACGGTGAGGATACGTAAAAGGAGACGCAAAGGAGCCGCGGCGTGTGGTAACATGAAAGCCCACAGATGTGGGCTTTTTCGt                                                <  1:85168/195‑1 (MQ=255)
                                                                                                                                                                                                                                           |                                                                                                                                                                                                          
GCTCTACCGGCTTGCTAAAAACTAATGTGAAATAAACGCTTAAATACAGAGCAGACTGAAGGAAAGCAAAATGCTAATCTCATAGACGAAGAGACTCCCGCTGTAACCTCCCCTCCCCCGAAAAAACCTGACATTTTCTTTTAGGACCAACAATGGGACCAAAATGAAAATTGAACTGAAGATTACAATCAATTTAACAACAAGTTACACAACCAATTCAGACTCCGCCAGCCCACCAATCATGATTGGACGGTGTAAGGACAACACCAACAAAAACAGGAAGTTAGAAGTCTCAGCAAAACACCGACCAGACGGTGAGGAGACATAAAAGGATACGCAAAGGAGCCGCGGCTCCTGGTAACATGAAAGCCCACAGATGTGGGCTTTTTCGTTGATGGTCAGAACGACCAGTTCACACCAGCTACCGCGTTCCACGGG  >  NC_000913/2777748‑2778185

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑