| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,101,768 | G→A | intergenic (‑24/+127) | wbbL ← / ← insH7 | interrupted rhamnosyltransferase WbbL/IS5 family transposase and trans‑activator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,101,768 | 0 | G | A | 88.9% | 12.3 / NA | 9 | intergenic (‑24/+127) | wbbL/insH7 | interrupted rhamnosyltransferase WbbL/IS5 family transposase and trans‑activator |
| Reads supporting (aligned to +/- strand): ref base G (0/0); major base A (5/3); minor base C (1/0); total (6/3) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
ATAATGAAGTCTGACACCAGCCAGGCTAAGCCTCAAGCACAGGTCAATATCTTCACAGTACATAAAGTAACCTTGATCGAAGCCATTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCACTGACGTATCATTTGGTCCGCCCGAAACAGGTTGG > NC_000913/2101558‑2101947 | aTAATGAAGTCTGACACCAGCCAGGCTAAGCATCAAGCACAGGTCAATATCTTCACAGTACATAAAGTAACCTTGATCGAAGCCATTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGAGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCAt > 1:68362/1‑251 (MQ=255) gCCTCAAGCACAGGTCAATATCTTCACAGTACATAAAGTAACCTTGATCGAAGCCATTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGAGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATg > 1:292/1‑251 (MQ=255) cTCAAGCACAGGTCAATATCTTCACAGTACATAAAGTACACTTGATCGAAGCCATTTACACGCCCAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGCATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGAGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGcc > 1:35712/1‑251 (MQ=255) cATAAAGTAACCTTGATCGAAGCCATTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACGTTCTTTAGGAATTTTTGTTGTATTAAGGTAGGTGCGAATAAGCGGATAAATTCTTCTCGGCTTTCTCAGTCAGTTCATTTCTTCATGTTTGAGCCGATGTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTttcttc < 1:162304/251‑1 (MQ=37) aTGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGAGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGcc < 1:14482/160‑1 (MQ=255) ccTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGAGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCACTGACGTATCATTTGGTCCGccc > 1:163321/1‑251 (MQ=255) tGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTCTTAAGGAAGGAGCGAATAAGCGGCGAAATTCTTCTAGGCTGCCTCCGTCATTTCATTTCTTCCTGTTTGAGCCGATTTTTTCGCCCGCAAATGCCTTGAATCAGCCTATTTAGACCGTATCTTCGCCATTTAAGGCGTTCTCCCCAGTTTTTAGTGAGATCTCTCCCCCTGACGTATCATTTGGTCCGCCCg > 1:123014/1‑250 (MQ=17) cACCANNTANNNACNNTATCAGAATAGATACTTTCTTTANGAATTTTTGTTTTATTAAGGAAGGTGCGANTNANCGGANNAATNCTTCTCGGCTNACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTANANGACTTGAATCAGCCTATTTAGACCGTTTCTTNGCCATTTAAGGCGTTATCCCCAGTNTTTTNNganan > 2:159825/1‑213 (MQ=17) gATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGAGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTGTGAGCCGATTTTTTCGCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTGCTGCGCCAGTTAAGGCGTTATCCTCAGTGTTTAGGGAGATCTCTGCCACTGACGTATCATTTGGTCCGCCCGAAACAGGTTgg < 1:35185/231‑1 (MQ=14) | ATAATGAAGTCTGACACCAGCCAGGCTAAGCCTCAAGCACAGGTCAATATCTTCACAGTACATAAAGTAACCTTGATCGAAGCCATTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCACTGACGTATCATTTGGTCCGCCCGAAACAGGTTGG > NC_000913/2101558‑2101947 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |