| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 4,549,192 | Δ39 bp | coding (385‑423/903 nt) | fimH → | type 1 fimbriae D‑mannose specific adhesin |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 4549192 | 4549230 | 39 | 10 [0] | [0] 10 | fimH | type 1 fimbriae D‑mannose specific adhesin |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4549191 | 0 (0.000) | 10 (1.060) | 9/310 | 0.1 | 100% | coding (384/903 nt) | fimH | type 1 fimbriae D‑mannose specific adhesin |
| ? | NC_000913 | 4549231 = | 0 (0.000) | coding (424/903 nt) | fimH | type 1 fimbriae D‑mannose specific adhesin | |||||
TTCGACGCAAATCTTTTGCCATAACGATTATCCGGAAACCATTACAGACTATGTCACACTGCAACGAGGCTCGGCTTATGGCGGCGTGTTATCTAATTTTTCCGGGACCGTAAAATATAGTGGCAGTAGCTATCCATTTCCTACCACCAGCGAAACGCCGCGCGTTGTTTATAATTCGAGAACGGATAAGCCGTGGCCGGTGGCGCTTTATTTGACGCCTGTGAGCAGTGCGGGCGGGGTGGCGATTAAAGCTGGCTCATTAATTGCCGTGCTTATTTTGCGACAGACCAACAACTATAACAGCGATGATTTCCAGTTTGTGTGGAATATTTACGCCAATAATGATGTGGTGGTGCCTACTGGCGGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGTGCCAATTCCTCTTA > NC_000913/4548984‑4549420 | ttCGACGCAAATCTTTTGCCATAACGATTATCCGGAAACCATTACAGACTATGTCACACTGCAACGAGGCTCGGCTTATGGCGGCGTGTTATCTAATTTTTCCGGGACCGTAAAATATAGTGGCAGTAGCTATCCATTTCCTCCCACCAGCGAAACGCCGCGCGTTGTTTATAATTCGAGAACGGATAAGCCGTGGCCGGTGGCGCTTaaagctggctcattaattgccgtgcttattttgcgacagacn < 1:135993‑M1/250‑43 (MQ=255) gACTATGTCACACTGCAACGAGGCTCGGCTTATAGCGGCGTGTTATCTAATTTTTCCGGGACCGTAAAATATAGTGGCAGTAGCTATCCATTTCCTACCACCAGCGAAACGCCGCGCGTTGTTTATAATTCGAGAACGGATAAGCCGTGGCCGGTGGCGCTTaaagctggctcattaattgccgtgcttattttgcgacagaccaacaactataacagcgatgatttccagtttgtgtggaatatttacgc < 1:33738‑M1/251‑90 (MQ=255) cAACGAGGCTCGGCTTATGGCGGCGTGTTATCTAATTTTTCCGGGACCGTAAAATATAGTGGCAGTAGCTATCCATTTCCTACCACCAGCGAAACGCCGCGCGTTGTTTATAATTCTAGAACGGATAAGCCGTGGCCGGGGGCGCTTtaagctggctcattaattgccgggcttatttttcgacag > 1:590‑M1/1‑147 (MQ=255) gCTCGGCTTATGGCGGCGTGTTATCTAATTTTTCCGGGACCGTAAAATAGAGTGGCAGTAGCTATCCATTTCCTACCTCCAGCGAAACGCCGCGCGTTGTGTATAATTCGAGAACGGATAAGCCGTGGCCGGTGGCGCTTagagctggctcattaattgccgtgcttattttgcgacagac < 1:141110‑M1/181‑42 (MQ=255) tATGGCGGCGTGTTATCTAATTTTTCCGGGACCGTAAAATATAGTGGCAGTAGCTATCCATTTCCTACCACCAGCGAAACGCCGCGCGTTGTTTATAATTCGAGAACGGATAAGCCGTGGCCGGTGGCGCTTaaagctggctcattaattgccgtgcttattttgcgacagaccaacaactataacagcgatgatttccagtttgtgtggaatatttacgccaataatgatgtggtggtgcctactggcg < 1:200266‑M1/250‑119 (MQ=255) ccATTTCCTACCACCAGCGAAACGCCGCGCGTTGTTTATAATTCGAGAACGGATAAGCCGTGGCCGGTGGCGCTTaaagctggctcattaattgccgtgcttattgtgcgacagaccaacaactataacagcgatgatttccagtttgtgtggtatatttacgccaataaggatgtgggggtgcctactggcggctgcgatgtttctgctcgtgatgtcaccgttactcttctggacttccctggttcag < 1:28227‑M1/250‑176 (MQ=255) tCCTACCTCCATCGAAACGCCGCGCGTTGTTTATAATTCGAGAACGTATAAGCCGTGGCCGGTGGCGCTTaaagctggctcattaattgccgtgcttattttgcgacagaccaacaactataacagcgatgatttccagtttgtgtgtaatatttacgccaataatgatgttgtggtgcctactggcggcttcgatgttgctgctcgtgatgtcaccgttactctgccggactaccctggttcagtgcca < 1:151893‑M1/250‑181 (MQ=255) gCCGTGGCCGGTGGCGCTTaaagctggctcattaattgccgtgcttattttgcgacagaccaacaactataacagcgatgatttccagtttgtgtggaatatttacgccaataatgatgtggtggtgcctactggcggctgcgatgtttctgctcgtgatgtcaccgttactctgccggactaccctggttcagtgccaattcctcttaccgtttattgtgcgaaaagc < 1:13366‑M1/229‑211 (MQ=255) gCCGTGGCCGGTGGCGCTTaaagctggctcattaattgccgtgcttattttgcgacagaccaacaactataacagcgatgatttccagnntgtgtg > 2:13366‑M1/1‑19 (MQ=255) ggTGGCGCTTaaagctggctcattaattgccgtgcttattttgcgacagaccaacaactataacagcgatgatttccagtttgtgtggaatatttacgccaataatgatgtggtggtgcctactggcggctgcgatgtttctgctcgggatgtcaccgtttatcttccggactaccccggttcagtgccaattcctcttaccgtttattgtgcgaaaaaccaaaacccggggtattacc > 1:17601‑M1/1‑10 (MQ=255) | TTCGACGCAAATCTTTTGCCATAACGATTATCCGGAAACCATTACAGACTATGTCACACTGCAACGAGGCTCGGCTTATGGCGGCGTGTTATCTAATTTTTCCGGGACCGTAAAATATAGTGGCAGTAGCTATCCATTTCCTACCACCAGCGAAACGCCGCGCGTTGTTTATAATTCGAGAACGGATAAGCCGTGGCCGGTGGCGCTTTATTTGACGCCTGTGAGCAGTGCGGGCGGGGTGGCGATTAAAGCTGGCTCATTAATTGCCGTGCTTATTTTGCGACAGACCAACAACTATAACAGCGATGATTTCCAGTTTGTGTGGAATATTTACGCCAATAATGATGTGGTGGTGCCTACTGGCGGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGTGCCAATTCCTCTTA > NC_000913/4548984‑4549420 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |