New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	2288919 =	NA (NA)	17 (1.790)	13/312	0.0	94.4%	noncoding (1195/1195 nt)	IS5	repeat region
	?	NC_000913	4536236 =	1 (0.110)					intergenic (‑2183/‑361)	topAI/ythB	toxin of the TopAI‑YjhQ toxin‑antitoxin system, TopA inhibitor/protein YthB

CAATATATGGTAGTCTGGATCAACGTCAGCTTTAAATGTGATGAGCCGTTCATGATACAGGAGTAGTAAAGGGCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAATTTCTTTGAACATCATTAAGCATATCATCATCGTCTATTTGCCAGAATCCGTCGACTTATAATCGCCAGAACGGCATATCAGGACGGTGCTGCGAACGCTGTGGCCCAAAACGTTCCAGTAAACTGTGTAGATGTTCGTAGATTTCCGAGCCATAATCGAAAAGGCGCGGATGTCTATTAAGGCATCCGGCTAATCTGTAAGCAATAACAAC  >  NC_000913/4535997‑4536451                                                                                                                                                                                                                                                |                                                                                                                                                                                                                        naaTATATGGTAGTCTGGATCAACGTCAGCTTTAAATGTGATGAGCCGTTCATGATACAGGAGTAGTAAAGGGCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGGGCTTTTTGGATTTAAAGAAAATGCAAGCAATAATAAAAAAATGGccgaaagaagggg                                                                                                                                                                                                              >  1:56146/2‑240 (MQ=255)                     ggcgatgttattcacgctggccaacctgtttcgggcggaccaaatgatacgtcagtgggagagatctcactaaaaactggggataacgccttaaatggcgaaaaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattctcaccttccCTAATTTCTTTGAACATCATTAAGCATatcat                                                                                                                                                                                          <  1:214921‑M2/32‑1 (MQ=255)                                                                                 gagatctcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTTCTTTGAACATCATTAAGCATATCATCATCGTCTATTTGCCAGAATCCGTCGACTTATAATCGCCAGAACGGCATATCAGGACGGt                                                                                                                              >  1:140526‑M2/160‑251 (MQ=255)                                                                                        cactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTTCTTTGAACATCATTAAGCATATCATCATCGTCTATTTGCCAGAATCCGTCGACTTATAATCGCCAGAACGGCATAGCAGGACGgtgn                                                                                                                            <  1:55467‑M2/94‑2 (MQ=255)                                                                                        cactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTTCTTTGAACATCATTAAGCAAATCATCAGCGTCTATTTGCCAGAAGCCGTCGACTCATAATCTCCAGAACGGCATATCAGGACGGtgc                                                                                                                            <  1:95083‑M2/94‑1 (MQ=255)                                                                                                     ggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTTCTTTGAACATCATTAAGCATATCATCATCGTCTATTTGCCAGAATCCGTCGACTTATAATCGCCAGAACGGCATATCAGGACGGTGCTGCGAACGCTGTGGCCCa                                                                                                          <  1:103759‑M2/112‑1 (MQ=255)                                                                                                      gataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTTCTTTGAACATCATTAAGCATATCATCATCGTc                                                                                                                                                                                   <  1:9179‑M2/39‑1 (MQ=255)                                                                                                       ataacgccttaaatggcgaagaaacggtctaaataggatgattcaaggcatttccgggagaaaaaatcggctcaaacatgatgaaatgaaatgactgagtaagcccagaagaatttcaccgcttattcgcaccttccCTAATTTCTTTGAACATCATTAAGCATATCATCATCGTCTATTTGCCAGAATCCGTCGa                                                                                                                                                               >  1:120720‑M2/138‑196 (MQ=255)                                                                                                                taaagggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgccccttccCTAATTTCTTTGAACATCATAAAGCATATCATCATCGTCTATTTGCCAGAATCCGTCGACTTATAATCGCCAGAACGGCATATCAGGACGGTGCTGCGAACGCTGTGGCCCAAAACGTTcc                                                                                                 <  1:49738‑M2/121‑1 (MQ=255)                                                                                                                       cgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTTCTTTGAACATCATTAAGCATATCATCATCGTCTATTTGCCAGAAGCCGTCGACTTATAATCGCCAGAACGGCATATCAGGACGGTGCTGCGAACGCTGTGGcc                                                                                                            <  1:181843‑M2/110‑1 (MQ=255)                                                                                                                                            ctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTTCTTTGaa                                                                                                                                                                                                            >  1:47093‑M2/101‑114 (MQ=255)                                                                                                                                            ctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTTCTTTGAACATCATTAAGCATATCATCATCGTCTATTTGCCAGAATCCGTCGACTTATAATCGCCAg                                                                                                                                                 >  1:2879‑M2/101‑173 (MQ=255)                                                                                                                                                                  gaaaaaatctgctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTTCTTTGAACATCATTa                                                                                                                                                                                                    <  1:203081‑M2/22‑1 (MQ=255)                                                                                                                                                                            gntcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTTCTTTGAACATCATTAAGCATATCATCATCGTCTATTTGCCAGAATCCGTCGACTTATAATCGCCAGAACGGCATATCAGGACGGTGCTGCGAACGCTGTGGCCCAAAACGTTCCAGTAAACTGTGTAGATGTTCGTAGATTTCCGAGCCATAATCGAAAAGgc                                                >  1:170897‑M2/69‑238 (MQ=255)                                                                                                                                                                              tcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTTCTTTGAACATCATTAAGCATATCATCATCGTCTATTTGCCAGAATCCGTCGACTTATAATCGCCAGAACGGCATATCAGGACGGtgctgc                                                                                                                         <  1:32612‑M2/97‑1 (MQ=255)                                                                                                                                                                                                                          tccccnnttattcgcaccttccCTAATTTCTTTGAACATCATTAAGCATATCATCATCGTCTATTTGCCAGAATCCGTCGACTTATAATCGCCAg                                                                                                                                                 <  2:2879‑M2/73‑1 (MQ=255)                                                                                                                                                                                                                           ccccgtttattcgcaccttccCTAAGTTCTTTGAACATCATTAAGCTAAGCATCATCGTCTATTTGCCAAAATCCGGCGACTTAGAATCGCCAAAACGGCATATCAGGACGGTGCTGCGAACGCTGTGGCCCAAAACGGCCCAGTAATCTGTGTTGATGTTCGTAGATTCCCGAGCCATAATCGAAAAGGCGCGGATATCTATTAAGGCATCCGGCTAATCTGTAAGCAAtaan     <  1:19271‑M2/213‑2 (MQ=255)                                                                                                                                                                                                                              cgcttattcgcaccttccCTAATTTCTTTGAACATCATTAAGCATATCATCATCGTCTATTTGCCAGAATCGGTCGACTTATAATCGCCAGAACGGCATATCAGGACTGTGCTGCGAACGCTGTGGCCCAAAAGGTCCCAGTAAACTGTTTAGTTGTTCGTAGATTTCCGAGCCATAATCGAAAAGGCGCGGATGTCTATTAAGGCATCCGGCTAATCTGTAAGCAataacacc  <  1:207462‑M2/216‑3 (MQ=255)                                                                                                                                                                                                                                                |                                                                                                                                                                                                                        CAATATATGGTAGTCTGGATCAACGTCAGCTTTAAATGTGATGAGCCGTTCATGATACAGGAGTAGTAAAGGGCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAATTTCTTTGAACATCATTAAGCATATCATCATCGTCTATTTGCCAGAATCCGTCGACTTATAATCGCCAGAACGGCATATCAGGACGGTGCTGCGAACGCTGTGGCCCAAAACGTTCCAGTAAACTGTGTAGATGTTCGTAGATTTCCGAGCCATAATCGAAAAGGCGCGGATGTCTATTAAGGCATCCGGCTAATCTGTAAGCAATAACAAC  >  NC_000913/4535997‑4536451

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.