New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	382179 =	NA (NA)	17 (1.800)	14/310	0.0	NA	noncoding (920/1331 nt)	IS2	repeat region
	?	NC_000913	= 382590	NA (NA)					noncoding (1331/1331 nt)	IS2	repeat region

GCAGAGAGCTTCGTGAAAACGATAAAGCGTGACTACATCAGTATCATGCCCAAACCAGACGGGTTAACGGCAGCAAAGAACCTTGCAGAGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAATTACCTATCAGGCAGTTTGCGCCAATCACTACCGGACCCTGAATAACGGCACCATGACAAATACGGGTATTCGCGCCGATAACAACTTCACCTGCAGTTTCATCAATAATTACCTGGTCTGCAATCTGAATATTTTTCTCTTTAACATTAAGCTTCAGATAGTTTTTCAGTTCCTGTGACAGAAGGTTGGGAATA  >  NC_000913/382370‑382786                                                                                                                                                                                                                             |                                                                                                                                                                                                     gCAGAGACCTTCGTGCAACCGATAAAGCGTGCGTACATCAGTATCATGCCGAAACCGGACGGGTTAACGGCAGCAACGGACCTTGCAGAGGCGTTCGAGCATTATAACGAATGGCCTCCGCATCGAGCGCTGGGTTATCGCCCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGGTCAGAGATACCAGATGTCTGGAAATATAGGGGCAAATCAAATTACCTATCAGGCAGTTTTCGCCAATCAc                                                                                                                                                                        >  1:77210/1‑251 (MQ=14)                                                                                                                                             ctcgcCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGGAATAACAGATGTCTGGAAATAGAGGTGCAGATCGAATTACCGATCAGGCAGTTTTCGTCATTCTCTACCGGACCCTAAATAACGGCGCCTTAAAAAATACGGGTATTCGCGCCGATAACAACTTCAc                                                                                                          <  1:97729/173‑1 (MQ=18)                                                                                                                                               cgcCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAATTACCTATCAGGCAGTTTGCGCCAATCACTACCGGACCCTGAATAACGGCACCATGACAAATACGGGTATTCGCGCCGATAACAACTTCACCTGCAGTTTCATCAATAATTACCTGGTCTGCAATcn                                                                      <  1:55045/207‑2 (MQ=255)                                                                                                                                                            tCTGCGGCAGCGGGCTTGTAATGGGTTAAGCGATAACAGATGTCTGGAAATATAGGGGCTAATCCAATTACCTATCAGGCAGTTTGCGCCAATCACTACCGGACCCTGAATAACGGCACCATGGCAAATACGGGTATTCGCGcc                                                                                                                        >  1:84917/1‑144 (MQ=255)                                                                                                                                                                         gCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAATTACCTATCAGGAAGTTTGCGCCAATCACTACCGGACCCTGAATAACGGCACCATGACAAATACGGGTATTCGCGCCGATAACAACTTCACCTGCAGTTTCATCAATAATTACCTGGTCTGCAATCTGAATATTTTTCTCTTTAACATTAAGCTTCAGATAGTTTTTCAGTTCCTGTGACAGAAGGTTGGGAATa  >  1:155820/1‑249 (MQ=255)                                                                                                                                                                                           gATAACAGATGTCTGGAAATATAGGGGCAAATCCAATTACCTATCAGGCAGTTTGCGCCAATCACTACCGGACCCGGAATAACGGCACCATGACAAATACGGGTATTCGCGCCGATAACAACTTCACCTGCAg                                                                                                    <  1:115228/133‑1 (MQ=255)                                                                                                                                                                                                       cTGGAAATATAGGGGCAAATCCAATTACCTATCAGGCAGTTTGCGCCAATCACTACCGGACCCTTAATAACGGCACCATGACAAATACGGGTATTCGCGCCGATAACAACTTCACCTGCAGTTTCATCAATAATTACCTg                                                                                 <  1:142322/140‑1 (MQ=255)                                                                                                                                                                                                                             |                                                                                                                                                                                                     GCAGAGAGCTTCGTGAAAACGATAAAGCGTGACTACATCAGTATCATGCCCAAACCAGACGGGTTAACGGCAGCAAAGAACCTTGCAGAGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAATTACCTATCAGGCAGTTTGCGCCAATCACTACCGGACCCTGAATAACGGCACCATGACAAATACGGGTATTCGCGCCGATAACAACTTCACCTGCAGTTTCATCAATAATTACCTGGTCTGCAATCTGAATATTTTTCTCTTTAACATTAAGCTTCAGATAGTTTTTCAGTTCCTGTGACAGAAGGTTGGGAATA  >  NC_000913/382370‑382786

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.