Predicted mutation
evidence seq id position mutation annotation gene description
JC JC NC_000913 1,105,376 IS2 (–) +5 bp intergenic (+83/‑34) csgC → / → ymdA curlin chaperone/uncharacterized protein YmdA

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 381260 =NA (NA)10 (1.050) 9/312 0.1 100% noncoding (1/1331 nt) IS2 repeat region
?NC_000913 1105376 = 0 (0.000)intergenic (+83/‑38) csgC/ymdA curlin chaperone/uncharacterized protein YmdA
* ? NC_000913 = 11053800 (0.000)7 (0.730) 6/314 0.3 100% intergenic (+87/‑34) csgC/ymdA curlin chaperone/uncharacterized protein YmdA
?NC_000913 1467910 = NA (NA)noncoding (1331/1331 nt) IS2 repeat region

GCTAATCAACCCATTGCTTTGACGAAGTTGAGTTTAAATATTTCCCCGGACGATCGGGTGAAAATAGTTGTTACTGTTTCTGATGGACAGTCACTTCATTTATCACAACAATGGCCGCCCTCTTCAGAAAAGTCTTAATTTGTTGAAATATCGAGCATAAGATGAATCTGGAGAGAATGGTCTGCTGCGAATCAGCCAACCTGAAAGTATGGATAACACAACCCTCAAGGATGACTAATCATTGAGGAAATAGAATAAATGTTCAGACCTTTTTTAAACTCTCTTATGCTCGGCAGTTTGTTTTTTCCTTTTATTGCCATTGCTGGAAGCACCGTGCAAGGGGGCGTGATCCATTTTTATGGCCAAATTGTGGAACCGGCATGTGACGTCAGCACCCAGTCATCACCCGTAGAAATGAACTGCCCACAGAATGGTTCTATTCCGGGCAAAACCTACTCCAGCA  >  NC_000913/1105156‑1105618
                                                                                                                                                                                                                            |                                                                                                                                                                                                                                                  
ggctgctacaccatgttgccgggcaacgagggagaccgtcatccccggttcaaagctctgctgaacaattgcgatcttttcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaACCCTCAAg                                                                                                                                                                                                                                            >  1:61064‑M2/221‑229 (MQ=255)
                                   ccgtcatccccggttcaaagctctgatgaacaattgcgatcttttcctgcgtggtacgccgtctgcgtttctcaggccctaagacctcaatcatctgttctccaatgcctagtctaaaaactagtattaagactatcacttctttaagtgatattggttgtctggagattcagggggccagtctaCCCCTCAAGGATGACTAATCATTGAGGAAATAGAATAAATg                                                                                                                                                                                                            >  1:196729‑M2/186‑226 (MQ=255)
                                          cgccggttcaaagctctgctgaacaattgcgatgttttcctgtgtggtaagccgtctgcgtttctccgtccctaagacatcaatcctctgttctacaatgactagtctaacacctagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaACCCTCAAGGATGACTAATCATTGAGGAAATAGAATAAATGTTCAGACCTTTTTTAAACTCTCTTATGCTCgg                                                                                                                                                                            >  1:205959‑M2/179‑251 (MQ=255)
                                           cccggatcaaagctctgctgaacaattgcgatcttttcctgtgtggtacgccgtatgcgtttctccggccctaagacatcaatcaactgttctacaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaAcc                                                                                                                                                                                                                                                  >  1:198513‑M2/178‑180 (MQ=255)
                                                  caaagctctgctgaacaattgcgatcttttcctgtgtggtacgccgtctgagttactacggacctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaACCCTCAAgg                                                                                                                                                                                                                                           >  1:161328‑M2/171‑180 (MQ=255)
                                                              aaTAGTTGTTACTGTTTCTGATGGACAGTCACTTCATTTATCACAACAATGGCCGCCCTCTTCAGAAAAGTCTTAATTTGTTGAAATATCGAGCATAAGATGAATCTGGAGAGAATGGTCTGCTGCGAATCAGCCAACCTGAAAGTATGGATAACACAACCCTtggatttgcccctatatttccagacacctgttatcacttaacccattacaagcccgctgcctcagatattcccgtggcgagcgataac                                                                                                                                                        <  1:208900‑M1/251‑89 (MQ=255)
                                                                 caattgcgatcttttcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaacactagtattaagactatcacttatttaagtgatattggttgtctggagcttcagggggccagtctaACCCTCAAGGATGACTAATCATTGAGGAAATAGAATAAATGTTCAGACCTTTTTTAAACTCTCTTATGCTCGGCAGTTTGTTTTTTCCTTTTATTg                                                                                                                                                     >  1:210740‑M2/156‑251 (MQ=255)
                                                                         atcttttcctgtgtggtacgccgtctccgtttctccggccgtaagacatcaatcatctgttctcccctgactagtctaaaaaatagtattcaggatatcacttatttaagtgatattggttgtctggaacttccgggggccagtctaACCCTCAAGGCTGACTAATCATTGGGGAAATAGAATAAATGATCAGACCTTTTTTAAACTCTCTTATGCTCGGCAGTTTGTTTTTTc                                                                                                                                                              >  1:207745‑M2/148‑234 (MQ=255)
                                                                                  aTGGACAGTCACTTCATTTATCACAACAATGGCCGCCCTCTTCAGAAAAGTCTTAATTTGTTGAAATATCGAGCATAAGATGAATCTGGAGAGAATGGTCTGCTGCGAATCAGCCAACCTGAAAGTATGGATAACACAACCCTtggatttgcccctatattgccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgn                                                                                                                                    <  1:21842‑M1/251‑109 (MQ=255)
                                                                                                                                                             agtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaACCCTCAAGGATGACTAATCATTGAGGAAATAGAATAAATGTTCAGACCTTTTTTAAACTCTCTTATGCTCGGCAGTTTGTTTTTTCCTTTTATTGCCATTGCTGGAAGCACCGTGCAAGGGGGCGTGATCCATTTTTATGGCCAAATTGTGGAACCGGCATGTGACGTCAGCACCCAGTCATCAc                                                           <  1:173140‑M2/186‑1 (MQ=255)
                                                                                                                                                                       ctatcacttatttaagtgatattggttgtctggagagtcagggggccagtctaAccc                                                                                                                                                                                                                                                 <  1:73075‑M2/4‑1 (MQ=255)
                                                                                                                                                                                  ggTCTGCTGCGAATCAGCCAACCTGAAAGTATGGATAACACAACCCTtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgcaaggttctttgctgccgttaacccgtctggtttgggcatgatactgatgt                                                     >  1:72698‑M1/1‑47 (MQ=255)
                                                                                                                                                                                           cGAATCAGCCAACCTGAAAGTATGGATAGCACAACCCTtggatttgcccctatatttccagacatctgttatcacttaacccattccaagcccgctgccgcagatcttaccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgcaaggttctttgctgccgttaacccgtctggtttgggcatgatactgatgtagtcacgctt                                           >  1:116520‑M1/1‑38 (MQ=255)
                                                                                                                                                                                               tCAGCCAACCTGAAAGTATGGATAACACAACCCTtggatttgcccctatatttccagacatctgttatcacttaacccattacaagc                                                                                                                                                                                           <  1:11162‑M1/87‑54 (MQ=255)
                                                                                                                                                                                               tCAGCCAACCTGAAAGTATGGATAACACAACCCTtggatttgcccctatatttccagacatctgttatcacttaacccattacaagc                                                                                                                                                                                           >  2:11162‑M1/1‑34 (MQ=255)
                                                                                                                                                                                                  gtctggagattcagggggccagtctaACCCTCAAGGATGACTAATCATTGAGGAAATAGAATAAATGTTCAGACCTTTTTTAAACTCTCTTATGCTCGGCAGTTTGTTTTTTCCTTTTATTGCCATTGCTGGAAGCACCGTGCAAGGGGGCGTGATCCATTTTTATGGCCAAATTGTGGAACCGGCATGTGACGTCAGCACCCAGTCATCACCCGTAGAAATGAACTGCCCACAGAATGGTTCTATTCCg                     <  1:138972‑M2/224‑1 (MQ=255)
                                                                                                                                                                                                                    aTAACACAACCCTtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgcaaggttctttgctgccgttaacccgtctggtttgggcatgatactgatgtagtcacgctttatcgtttgcacgaagctctctgctattccgttactctccg  <  1:179846‑M1/251‑239 (MQ=255)
                                                                                                                                                                                                                            |                                                                                                                                                                                                                                                  
GCTAATCAACCCATTGCTTTGACGAAGTTGAGTTTAAATATTTCCCCGGACGATCGGGTGAAAATAGTTGTTACTGTTTCTGATGGACAGTCACTTCATTTATCACAACAATGGCCGCCCTCTTCAGAAAAGTCTTAATTTGTTGAAATATCGAGCATAAGATGAATCTGGAGAGAATGGTCTGCTGCGAATCAGCCAACCTGAAAGTATGGATAACACAACCCTCAAGGATGACTAATCATTGAGGAAATAGAATAAATGTTCAGACCTTTTTTAAACTCTCTTATGCTCGGCAGTTTGTTTTTTCCTTTTATTGCCATTGCTGGAAGCACCGTGCAAGGGGGCGTGATCCATTTTTATGGCCAAATTGTGGAACCGGCATGTGACGTCAGCACCCAGTCATCACCCGTAGAAATGAACTGCCCACAGAATGGTTCTATTCCGGGCAAAACCTACTCCAGCA  >  NC_000913/1105156‑1105618

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.