New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 4123927	0 (0.000)	15 (1.580)	8/312	0.1	100%	coding (530/1026 nt)	cytR	DNA‑binding transcriptional repressor CytR
	?	NC_000913	= 4499511	NA (NA)					noncoding (1331/1331 nt)	IS2	repeat region

AGGCGGTTGTGGAAGATCAAGCAGCTGCTGCATCGCTTTGCTTCCGGCTTCGAAGGTGAAGTCGCCACGGGCGATGTATTGCGGATCAACCATAATGCCGCAGCGACGCAGCGCCTGAACATAGCCTTGCAGGCGGTAGTGACACAGCGGCATCTCTTCGGGACCGGCTATACAGCCAATCCGTTTATGCCCTTGCTCATATAAATAATTTACTGCATCAAATGCGGCGGTCAGATTGTCGATATGAACTGTAGGCAGCTCCAGCTCCGGTGCAAATTCGTTCGCCATCACCATCGGCGGCAGATTACGCTGTTCCTCAATGCTGGCATCAAACGGCAGCCTTGAACCCAGCAACAACATGCCATCAATTTGCTTGGTGATGATCAAATCGATAAAGGTTTTTTCCTGCTGATTTTGATGCGCACAGTCGCCAATCAGCACCAGATATCCGTGA  >  NC_000913/4123719‑4124172                                                                                                                                                                                                                 |                                                                                                                                                                                                                                                      aGGCGGTTGTGGAAGATCAAGCAGCTGCTGCATCGCTTTGCTTCCGGCTTCGAAGGTGAAGTCGCCACGGGCGATGTATTGCGGATCAACCATAATGCCGCAGCGACGCAGCGCCTGAACATAGCCTTGCAGGCGGTAGTGACACAGCGGCATCTCTTCGGGACCGGTTATACAGCCAATCCGTTTATGCCCTTGCTCATATAAATAATtggatttgcccctatatttccagacatctgttatcacttaan                                                                                                                                                                                                             <  1:63315‑M1/251‑43 (MQ=255)        tgtgGAAGATCAAGCAGCTGCTGCATCGCTTTGCTTCCGGCTTCGAAGGTGAAGTCGCCACGGGCGATGTATTGCGGATCAACCATAATGCCGCAGCGACGCAGCGCCTGAACATAGCCTTGCAGGCGGTAGTGACACAGCGGCATCTCTTCGGGACCGGTTAGACAGTCAATCCGTGTATGCCCTTGCTCATATAAATAATtggatttgcccctatattgccagacatctgttatcacttaacccatta                                                                                                                                                                                                       <  1:211977‑M1/250‑49 (MQ=255)                  naagCAGCTGCTGCATCGCTTTGCTTACGGCTTCGAAGGTGAAGTCGCCACGGGCGATGTATTGCGGATCAACCATAATGCCGCAGCGACGCAGCGCCTGAACATAGCCTTGCAGGCGGAAGTGACACAGCGGCATCTCTTCGGGACCGGTTATACAGCCAATCCGTTTATGCCCTTGCTCATATAAATAATtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctg                                                                                                                                                                                            >  1:175705‑M1/2‑192 (MQ=255)                                                                gCCACGGGCGATGTATTGCGGATCAACCATAATGCCGCAGCGACGCAGCGCCTGAACATAGCCTTGCAGGCGGTAGTGACACAGCGGCATCTCTTCGGGACCGGTTATACAGCCAATCCGTTTATGCCCTTGCTCATATAAATAATtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcgga                                                                                                                                              <  1:102961‑M1/251‑106 (MQ=255)                                                                    cGGGCGATGTATTGCGGATCAACCATAATGCCGCAGCGACGCAGCGCCTGAACATAGCCTTGCAGGCGGTAGTGACACAGCGGCATCTCTTCGGGACCGGTTATACAGCCAATCCGTTTATGCCCTTGCTCATATAAATAATtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgcc                                                                                                                                          <  1:5280‑M1/251‑110 (MQ=255)                                                                       ncgATGTATTGCGGATCAACCATAATGCCGCAGCGACGCAGCGCCTGAACATAGCCTTGCAGGCGGTAGTGACACAGCGGCATCTCTTCGGGACCGGTTATACAGCCAATCCGTTTATGCCCTTGCTCATATAAATAATtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccatt                                                                                                                                       >  1:25737‑M1/2‑139 (MQ=255)                                                                                    natCAACCATAATGCCGCAGCGACGCAGCGCCTGAACATAGCCTTGCAGGCGGTAGTGACACAGCGGCATCTCTTCGGGACCGGTTATCCAGCCAATCCGTTTATGCCCTTGCTCCTATAAATAATtggctttgcccctatatttccagacatctgttatcacttaacccattaccagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgcgctcgga                                                                                                                             >  1:63564‑M1/2‑126 (MQ=255)                                                                                                         gACGCAGCGCCTGAACATAGCCTTGCAGGAGGTAGTGACACAGCGGCATCTCTTCGGGACCGGTTATACAGCCCATCCGTTTATGCCCTTGCTCATATAAATAATtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgacgcagatattcccgtggcgcgcgataaaccagcgcactatgcggatgccattcgttatactgctcgaacgcctctgcaaggttctt                                                                                                     >  1:18058‑M1/1‑105 (MQ=255)                                                                                                               gcgcCTGAACATAGCCTTGCAGGCGGTAGTGACACAGCGGCATCTCTTCGGGACCGGTTATACAGCCAATCCGTTTATGCCCTTGCTCATATAAATAATtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgcaaggttctttgctgc                                                                                               <  1:80404‑M1/251‑153 (MQ=255)                                                                                                                                               cacaGCGGCATCTCTTCGGGACCGGTTATACAGCCAATCCGTTTATGCCCTTGCTCATATAAATAATtggatttgcccc                                                                                                                                                                                                                                           <  1:106407‑M1/79‑13 (MQ=255)                                                                                                                                                                     cggttatacagcCAATCCGTTTATGCCCTTGCTCATATAAATAATtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcga                                                                                                                                                                   >  1:65401‑M1/5‑45 (MQ=255)                                                                                                                                                                      ggttatacagCCAATCCGTTTATGCCCTTGCTCATATAAATAATtggatttgcccctatatttccagacatctgttatc                                                                                                                                                                                                                    <  1:4669‑M1/76‑36 (MQ=255)                                                                                                                                                                      ggttatacagCCAATCCGTTTATGCCCTTGCTCATATAAATAATtggatttgcccctatatttccagacatctgttatc                                                                                                                                                                                                                    >  2:4669‑M1/4‑44 (MQ=255)                                                                                                                                                                             cAGCCAATCCGTTTATGCCCTTGCTCATATAAATAATtggatttgcccctatccttcccgccatctcttaccccttaacccattacaagcccgctgccgccgctcctcccgtcgcgagcgataaccaagcgcactatgcggatgccattcgttatactgctcgaacgcctctgcaaggttctttgctgccgttaacccgtctggtttgggcatgatactgatgtagtcacgctttatcgttttcacgaagc                                 >  1:205714‑M1/1‑37 (MQ=255)                                                                                                                                                                                                            aataattggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgcaaggttctttgctgccgttaacccgtctggtttgggcatgatactgatgtagtcacgctttatcgtttgcacgaagctctctgctattccgttactctccggactccg  <  1:89326‑M1/251‑246 (MQ=255)                                                                                                                                                                                                                 |                                                                                                                                                                                                                                                      AGGCGGTTGTGGAAGATCAAGCAGCTGCTGCATCGCTTTGCTTCCGGCTTCGAAGGTGAAGTCGCCACGGGCGATGTATTGCGGATCAACCATAATGCCGCAGCGACGCAGCGCCTGAACATAGCCTTGCAGGCGGTAGTGACACAGCGGCATCTCTTCGGGACCGGCTATACAGCCAATCCGTTTATGCCCTTGCTCATATAAATAATTTACTGCATCAAATGCGGCGGTCAGATTGTCGATATGAACTGTAGGCAGCTCCAGCTCCGGTGCAAATTCGTTCGCCATCACCATCGGCGGCAGATTACGCTGTTCCTCAATGCTGGCATCAAACGGCAGCCTTGAACCCAGCAACAACATGCCATCAATTTGCTTGGTGATGATCAAATCGATAAAGGTTTTTTCCTGCTGATTTTGATGCGCACAGTCGCCAATCAGCACCAGATATCCGTGA  >  NC_000913/4123719‑4124172

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.