| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC JC | NC_000913 | 57,276 | IS2 (+) +5 bp | intergenic (‑167/‑84) | lptD ← / → djlA | lipopolysaccharide assembly protein LptD/co‑chaperone protein DjlA |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 57276 = | 0 (0.000) | 15 (1.570) | 15/314 | 0.0 | 100% | intergenic (‑167/‑88) | lptD/djlA | lipopolysaccharide assembly protein LptD/co‑chaperone protein DjlA |
| ? | NC_000913 | = 382590 | NA (NA) | noncoding (1331/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | = 57280 | 0 (0.000) | 15 (1.570) | 13/314 | 0.0 | 100% | intergenic (‑171/‑84) | lptD/djlA | lipopolysaccharide assembly protein LptD/co‑chaperone protein DjlA |
| ? | NC_000913 | 381260 = | NA (NA) | noncoding (1/1331 nt) | IS2 | repeat region | |||||
TGCCAGTCCCTGTTGACTATAAAGGGCGGTGGCAATCATGGTGGCCAGGAGAGTGGGGATACGTTTTTTCATACGTTGATTTTATTGTTCCATCATCGGTAACGTTGCGCGTGACAAACGGTCAGAGACTAACGTACTCGTCATCTCTACGCTAGTGTTAATCCTGTCCGAATAGCGTCAGTGGTGTTAGGCACGGCATTGAATGACAGGTATGATAATGCAAATTATAGGCGATGTCCCACAATTGACCGCAGCCGGAAAACGGTAAAAGCACCTTTATATTGTGGGAGATAGCCCTGATATCCGTGTGTCGATTTGGGGAATATATGCAGTATTGGGGAAAAATCATTGGCGTGGCCGTGGCCTTACTGATGGGCGGCGGCTTTTGGGGCGTAGTGTTAGGCCTGTTAATTGGCCATATGTTTGATAAAGCCCGTAGCCGTAAAATGGCGTGGTTCGCCA > NC_000913/57038‑57499 | cggagagtaacggaatagcagagagcttcgtgaaaacgataaagcgtgactacatcagtatcatgcccaaaccagacgggttaacggcagcaaagaaccttgcagaggcgttcgagcattataacgaatggcatccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaCCACAATTGACCg > 1:68652‑M1/239‑251 (MQ=255) gCCAGTCCCTGTTGACTATAAAGGGCGGTGGCAATCATGGTGGCCAGGAGAGTGGGGATACGTTTTTTCATACGTTGATTTTATTGTTCCATCATCGGTAACGTTGCGCGTGACAAACGGTCAGAGACTAACGTACTCGTCATCTCTACGCTAGTGTTAATCCTGTCCGAATAGCGTCAGTGGTGTTAGGCACGGCATTGAATGACAGGTATGATAATGCAAATGATAGGCGATGTCCCACAtagactgg < 1:61105‑M1/250‑9 (MQ=255) gtgaaaacgataaagcgtgactacatcagtatcatgcccaaaccagacgggttaacggcagcaaagaaccttgcagaggcgttcgagcattataacgaatggcatccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaCCACAATTGACCGCAGCCGGAAAACGGTAAAAGCACCTTtat < 1:168967‑M1/42‑1 (MQ=255) cgataaagcgtgactacatcagtatcatgcccaaaccagacgggttaacggcagcaaagaaccttgcagaggcgttcgagcattataacgaatggcatccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaCCACAATTGACCGCAGCCGGAAAACGGTAAAAGCACCTTTATATTGTgg > 1:211004‑M1/203‑251 (MQ=255) gCCAGGAGAGTGGGGATACGTTTTTTCATACGTTGATTTTATTGTTCCATCATCGGTAACGTTGCGCGTGACAAACGGTCAGAGACTAACGTACTCGTCATCTCTACGCTAGTGTTAATCCTGTCCGAATAGCGTCAGTGGTGTTAGGCACGGCATTGAATGACAGGTATGATAATGCAAATTATAGGCGATGTCCCACAtagactggccccctgaatctccagacaaccaatatcact > 1:12580‑M1/1‑200 (MQ=255) gggATACGTTTTTTCATACGTTGATTTTATTGTTCCATCATCGGTAACGTTGCGCGTGACAAAAGGTCAGAGACTAACGTACTCGTCATCTCTACGCTAGTGTTAATCCTGTCCGAATAGCGTCAGTGGAGTTAGGCACGGCATTGAATGACAGGTATGCTAATGCACATTATAGGCGATGTCCCACAtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatact > 1:117357‑M1/1‑188 (MQ=255) gTTTTTTCATACGTTGATTTTATTGTTCCATCATCGGTAACGTTGCGCGTGACAAACGGTCAGAGACTAACGTACTCGTCATCTCTACGCTAGTGTTAATCCTGTCCTAATAGCGTCATTTGTGTTAGGCACGGCATTGAATGACAGTTATGATAATGCAAATTATAGGCGATGTCCCACAtagactggccccctgaatcaccagacaaccaatatcacttaaataattgatagtcttaatactagttttt < 1:29835‑M1/251‑71 (MQ=255) gcccaaaccagacgggttaacggcagcaaagaaccttgcagaggcgttcgagcattataacgaatggcatccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaCCACAATTGACCGCAGCCGGAAAACGGTAAAAGCa < 1:48098‑M1/35‑1 (MQ=255) aaccagacgggttaacggcagcaaagaaccttgcagaggcgttcgagcattataacgaatggcatccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaCCACAATTGACCGCAGCCGGAAAACGGTAAAAGCACCTTTATATTGTGGGAGATAGCCCTGATATCCGTGTGTCGATTTggg > 1:161907‑M1/170‑251 (MQ=255) tGATTTTATTGTTCCATCATCGGTAACGTTGCGCGTGACAAACGGTCAGAGACTAACGTACTCGTCATCTCTACGCTAGTGTTAATCCTGTCCGAATAGCGTCAGTGGTGTTAGGCACGGCATTGAATGACAGTTATGATAATGCAAATTATAGGCGATGTCCCACAtagactagcccccttaagctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattg < 1:148315‑M1/250‑84 (MQ=255) gcagcaaagaaccttgcagaggcgttcgagcattataacgaatggcatccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaCCACAATTGACCGCAGCCGGAAAACGGTAAAAGCACCTTTATATTGTGGGAGATAGCCCTGATATCCGTGTGTCGATTTGGGGAATATATGCAGTATTg < 1:178509‑M1/99‑1 (MQ=255) cttgcagaggcgttcgagcattataacgaatggcatccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaCCACAATTGAc > 1:17863‑M1/141‑151 (MQ=255) tGACAATCNGNNNGNNACTAACGTACTCGTCATCTCTACGCTAGTGTTAATACTGTCCGANTCGCGTCAGTGGTGTNAGNCACGNCATNGAATGACAGGTATGATAATGCAAATTATAGGCGATGTCCCACAtagactggccccctgcatctacagccaacc > 2:153267‑M1/1‑132 (MQ=255) tGACAAACGGTCAGAGACTAACGTACTCGTCATCTCTACGCTAGTGTTAATCCTGTCCTAATAGCGTCAGTGGTGTTAGGCACGGCATTGAATGACAGGTAGGATAATGCAAATTATAGGCGATGTCCCACAtagactggccccctgaatctccagacaacc < 1:153267‑M1/162‑31 (MQ=255) tccgcatagtgcgctgggttatcgctcgccacgggaacatctgcggcagcgggcttgtaatgggttaagagataacagatgtctggaaatataggggcaaatccaCCACAATTGACCGCAGCCGGAAAACGGTAAAAGCACCTTTATATTGTGGGAGATAGCCCTGATATCCGTGTGTCGATTTGGGGAATATATGCAGAATTGGGGAAAAATCATTGGCGTGGCCGTGGCCTTACTGATGGGCGGCGGCt < 1:143271‑M1/146‑1 (MQ=255) tctcTACGCTAGTGTTAATCCTGTCCGAATAGCGTCAGTGGTGTTAGGCACGGCATTGAATGACAGGTATGATAATGCAAATTATAGGNNATGTCCnnc > 2:15375/1‑99 (MQ=255) tctcTACGCTAGTGTTAATCCTGTCCGAATAGCGTCAGTGGTGTTAGGCACGGCATTGAATGACAGGTATGATAATGCAAATTATAGGCGATGTCCCACAtagactggccccctgaatctccagacaacc < 1:15375‑M1/130‑31 (MQ=255) cgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaCCACAATTGACCGCAGCCGGAAAACGGTAAAAGCACCTTTATATTGTGGGAGATAGCCCTGATATCCGTGTGTCGATTTGGGGAATATATGCAGTATTGGGGAAAAATCATTGGCGTGGCCGTGGCCTTACTGATGGGCGGCGGCTTTTGGGGCGt < 1:115897‑M1/156‑1 (MQ=255) ggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaCCACAATTGACCGCAGCCGGAAAACGGTAAAAGCACCTTTATATTGTGGGAGATAg > 1:193404‑M1/90‑145 (MQ=255) ttAATCCTGTCCGAATAGCGTCAGTGGTGTGAGGCACGGCATTGAATGACAGGTATGATAATGCAAATTATAGCAGATGTCACAGAtagaatggtccactgaatccccaaacaacccatatcacttaactaagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtattagggccggagaaacgcagacggcgtaccacacaggaaaagatcgcaattat > 1:202655‑M1/1‑86 (MQ=255) ccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaCCACAATTGACCGCAGCCGGAAAACGGTAAAAGCACCTTTATATTGTGGGAGATAGCCCTGATATCCGTGTGTCGATTTGGGGAATATATGCAGTATTGGGGAAAAATCATTGGCGTGGCCGTGGCCTTACTGATGGGCGGCGGCTTTTGGGGCGTAGTGTTAGGCCTGTTAAt < 1:113427‑M1/174‑1 (MQ=255) aaTAGCGTCAGTGGTGTTAGGCACGGCATTGAATGACAGGTATGATAATCCAACTTATAGGCGATGTCCCCCAtcgactgcccccctgaatctccagacaaccaatatcccttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtcttagggccgt > 1:101374‑M1/1‑73 (MQ=255) ggtgTTAGGCACGGCATTGAATGACAGGTATTATAATGCAAATTATAGGCGATGTCCCACAtagactggccccctgaatctccagacaaccaatatcacttagataagtgatagtcttaatactagtttttagactagtcattggagaagagatgattgatgtcttagggacgaagaggcgcagacgtcgtaccacacatgaaaagatcgcaattgttcagcagagctttgaaccggggatgacggtctcc < 1:219475‑M1/251‑191 (MQ=255) taagtgataacagatgtctggaaatataggggcaaatccaCCACAATTGACCGCAGCCGGAAAACGGTAAAAGCACCTTTATATTGTGGGAGATAGCCCTGATATCCGTGTGTCGATTTGGGGAATATATGCAGGATTGGGGAAAAATCATTGGCGTGGCCGTGGCCTTACTGATGGGCGGCGGCTTTTGGGGc > 1:155452‑M1/41‑194 (MQ=255) agtgataacagatgtatggaaatatagggtcaaatcctCCACAATGGAACGCAGCCGGAAAACGGTAAAAGCACCTTTATATTGTGGGAGATAGCCCTGAGATGCGTGGGTCGATGTGGGGAATATATTCAGTATTGGGGAAAAATCATTGTCGTGGCCGTGGCCTTGCTGATGGGAGGCGGCTTTTGGGGCGTAGGGTTAGGCCTGTTAATTGGCCATATGTTTGATAAAGCCCGTAGCCGTAAAATGGc > 1:165772‑M1/39‑251 (MQ=255) cagatgtctggaaatataggggcaaatccaCCACAATTGACAGCAGCCGGAAAACGGTAAACGCACCTATATATTGTGGGAGATAGCCCTGATATCCGTGTGTCGATTTGGGGAATATATGCAGTATTGGGGAAAAATCATTGGCGTGGCCGTGGCCTTACTGATGGGCGGCGGCTTTTgggg < 1:205665‑M1/153‑1 (MQ=255) ntaTGATAATGCAAATTATAGGCGATGTCCCACAtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtctta > 1:128491‑M1/2‑34 (MQ=255) gTATGATAATGCAAATTATAGGCGATGTCCCACAtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtctta < 2:128491‑M1/92‑59 (MQ=255) aTGATAATGCAAAGTATAGGCGATGTCCCACAtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagttttgagactagtcattggagaacagatgattgatgtcttagggccggagaaacgcagacggcgtaccacacaggaaaagatcgcaattgttcagcagagctttgaaccggggatgacggtctccctcgttgcccggcaacatggtgtagcag < 1:33850‑M1/250‑219 (MQ=255) tGATAATGCAAATTATAGGCGATGTCCCACAtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtcttagggccggagaaacgcagacggcgtaccacacaggaaaagatcgcaattgttcagcagagctttgaaccggggatgacggtctccc < 1:162446‑M1/222‑192 (MQ=255) ccaCCACAATTGACCGCAGCCGGAAAACGGTAAAAGCACCTTTATATTGTGGGAGATAGACCTGATATCCGTGTGTCGATTTGGGGAATCTATGCAGTATTGGGGAAAAATCATTGGCGTGGCCGTGGCCTTACTGATGGGCGGCGGCTTTTGGGGCGTCGTGTTAGGCCTGTTAATTGGCCATATGTTTGATAAAGCCCGTAGCCGTAAAATGGCGTGGTTCGCCa < 1:93414‑M1/224‑1 (MQ=255) | TGCCAGTCCCTGTTGACTATAAAGGGCGGTGGCAATCATGGTGGCCAGGAGAGTGGGGATACGTTTTTTCATACGTTGATTTTATTGTTCCATCATCGGTAACGTTGCGCGTGACAAACGGTCAGAGACTAACGTACTCGTCATCTCTACGCTAGTGTTAATCCTGTCCGAATAGCGTCAGTGGTGTTAGGCACGGCATTGAATGACAGGTATGATAATGCAAATTATAGGCGATGTCCCACAATTGACCGCAGCCGGAAAACGGTAAAAGCACCTTTATATTGTGGGAGATAGCCCTGATATCCGTGTGTCGATTTGGGGAATATATGCAGTATTGGGGAAAAATCATTGGCGTGGCCGTGGCCTTACTGATGGGCGGCGGCTTTTGGGGCGTAGTGTTAGGCCTGTTAATTGGCCATATGTTTGATAAAGCCCGTAGCCGTAAAATGGCGTGGTTCGCCA > NC_000913/57038‑57499 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |