| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC JC | NC_000913 | 2,406,780 | IS1 (–) +8 bp | intergenic (‑139/‑774) | lrhA ← / → alaA | DNA‑binding transcriptional dual regulator LrhA/glutamate‑‑pyruvate aminotransferase AlaA |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1978503 = | NA (NA) | 9 (0.890) | 8/296 | 0.2 | 100% | noncoding (768/768 nt) | IS1 | repeat region |
| ? | NC_000913 | = 2406787 | 0 (0.000) | intergenic (‑146/‑774) | lrhA/alaA | DNA‑binding transcriptional dual regulator LrhA/glutamate‑‑pyruvate aminotransferase AlaA | |||||
| * | ? | NC_000913 | = 1979270 | NA (NA) | 11 (1.090) | 9/298 | 0.1 | 100% | noncoding (1/768 nt) | IS1 | repeat region |
| ? | NC_000913 | 2406780 = | 0 (0.000) | intergenic (‑139/‑781) | lrhA/alaA | DNA‑binding transcriptional dual regulator LrhA/glutamate‑‑pyruvate aminotransferase AlaA | |||||
CAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATTATCGGACGATTTGCACTTATCATATATTATCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCCTTGTTCCACTCTCGTGCAGCATCGCTGGTCATACGCGAACACGTACCAACAGCAATGGTGAGGCGGCATCAAGAGCAGGGATCCGTCATTTATCCG > NC_000913/2406584‑2407015 | caaATGTTCTCAGCAGATCGAGGTCGAGGTTAATTATCGGCCGATTTGCACATATCATATATTATCACTTCCTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTACATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATCTGAGTTGCACTAAAAAAGCggtactgactccaacttattgatcgtgttttatgttcagataatgcc < 1:183218‑M2/251‑48 (MQ=255) gtcnaggtTAATTATCGGACGATTTGCACTTATCANANATTATCACTTACTGGCGGCTCATACTGAGTTGGTTAATGCTGTGCACANACAAACAAGCNATTNNATTTNTNANGTTCCTCCCTGGCAGTTTCATCCGGAACCNGGACGAAAGTAAAAATGCATATGNNTTNNNCTNNAAAAg < 2:190606/181‑1 (MQ=255) gtcgaggtTAATTATCGGACGATTTGCACTTATCATATATTCTCACTTACTGGCGGCTCATAATGAGTTGGTTAATGCTGTGACCACACAAACAAGCAACTCCATTTGTAATGTGACTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAg > 1:190606/1‑181 (MQ=255) catgttttacggcagtgagagcagagatagcgctgatgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccAAAAAAg > 1:12780‑M2/172‑178 (MQ=255) aTTATCGGACGATTTGCACTTATCATATATTATCACTTACTGGCGGCTCTTACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCTCTAAAAAAGCggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgatttt > 1:229847‑M2/1‑172 (MQ=255) cTGAGCTGGCTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCggtaatgactcaaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccagg < 1:176870‑M2/235‑116 (MQ=255) cnccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATGCGCGTGTTTGTAtaaatg > 1:199314‑M2/110‑236 (MQ=255) caccaccccgtcagtagctgaacaggagggacagctgatagaaacagnagccactggnncanctcaanannncnnncanacactaaagcagtaagttgncannatcaccNAAAAAGCGACTCACAGTGTTCCGTta < 2:58044‑M2/27‑1 (MQ=255) caccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccAAAAAAGCGACTCACATTGTTCCGTta > 1:58044‑M2/110‑136 (MQ=255) naaacaagCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgac < 1:31051‑M2/181‑89 (MQ=255) caaacaaGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCggtaatgactccaact < 1:74036‑M2/110‑17 (MQ=255) aggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCCTTGTTCCACTCTCGGGCATCATCGc < 1:201125‑M2/165‑1 (MQ=255) gacagctgatagaaacagaagccactggagcccctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCCTTGTTCCACTCTCGTGCAGCATCGCTGGTc > 1:97886‑M2/81‑250 (MQ=255) aTTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggttatgccgctcaattcgctgcgtatatcgcttgc > 1:9670‑M2/1‑84 (MQ=255) gatagaaacagaagccactggagtacctcaaaaacaccatcatacactaaatcagtaagttggccgcctcaccAAAAAAGCGACTCACATTGTTCAGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTATTTTCTATTTATGACCTGCGCGTGTTTGTATCAATGTACATGTGAGTCATTGTTCCCCTCTCGTGCAGCATCGCTGGTCCTAcgcg > 1:182698‑M2/74‑250 (MQ=255) gaaacagaagccactggagcacctcaacaacaccatcatacactaaatcagtaagttggcagcatcaccAAAAAAGCGACTCACATTg > 1:207131‑M2/70‑88 (MQ=255) nactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCCTTGTTCCACTCTCGTGCAGCATCGCTGGTCATACGCGAACACGTACCAACAGc > 1:47230‑M2/59‑251 (MQ=255) cGAAAGTCAAAATGCATATGAGTTGCACTAAAACAGCgggaatgactccaacttattgatagtgttttatgttcagataatgcc < 1:72719‑M2/84‑48 (MQ=255) gTAAAAATGCATATGAGTTGCACTAAAAAAGCggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcagg < 1:57403‑M2/165‑134 (MQ=255) gTAAAAATGCANNTGAGTTGCANTAAAAAAGCggtaatgactccaacttattgatagtgttttatgttcagataatncccgatgacnnggncatgcngnnncnnngantttgagaacgacagcgactnccnncccagcngtgccaggtgctgcctcagattcagg > 2:57403‑M2/1‑32 (MQ=255) gtaagttggcagcatcaccAAAAAAGCGACTCACATTGTTCCGTTATACTGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTAt > 1:34145‑M2/20‑118 (MQ=255) tggcagcatcaccAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGCCGTAGATCACAGAATCTATCTTCCGGAATCGACTCTCTATCAAGTTACTCACTCTTTTCTATTTATGACATCCGCGTGTTTGTATAACTGTCAATGTGCGTCCTTGTTCCACTCTCGTGCAGCCTCGCTGGTCATACGCGCACACGTCCCACCAGCAATGGTGAGGCGGCATCAAGAGCAGGGATCCGTCATTTATCCg > 1:122334‑M2/14‑249 (MQ=255) | CAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATTATCGGACGATTTGCACTTATCATATATTATCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCCTTGTTCCACTCTCGTGCAGCATCGCTGGTCATACGCGAACACGTACCAACAGCAATGGTGAGGCGGCATCAAGAGCAGGGATCCGTCATTTATCCG > NC_000913/2406584‑2407015 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |