| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC JC | NC_000913 | 4,123,923 | IS2 (–) +5 bp | coding (530‑534/1026 nt) | cytR ← | DNA‑binding transcriptional repressor CytR |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4123923 = | 0 (0.000) | 7 (0.700) | 6/296 | 0.3 | 100% | coding (534/1026 nt) | cytR | DNA‑binding transcriptional repressor CytR |
| ? | NC_000913 | 4498181 = | NA (NA) | noncoding (1/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | = 4123927 | 0 (0.000) | 13 (1.290) | 10/296 | 0.1 | 100% | coding (530/1026 nt) | cytR | DNA‑binding transcriptional repressor CytR |
| ? | NC_000913 | = 4499511 | NA (NA) | noncoding (1331/1331 nt) | IS2 | repeat region | |||||
CGCCGAGCGCCATCACATCGCTATGGCAGAAGACAGCAGTAGGCGGTTGTGGAAGATCAAGCAGCTGCTGCATCGCTTTGCTTCCGGCTTCGAAGGTGAAGTCGCCACGGGCGATGTATTGCGGATCAACCATAATGCCGCAGCGACGCAGCGCCTGAACATAGCCTTGCAGGCGGTAGTGACACAGCGGCATCTCTTCGGGACCGGCTATACAGCCAATCCGTTTATGCCCTTGCTCATATAAATAATTTACTGCATCAAATGCGGCGGTCAGATTGTCGATATGAACTGTAGGCAGCTCCAGCTCCGGTGCAAATTCGTTCGCCATCACCATCGGCGGCAGATTACGCTGTTCCTCAATGCTGGCATCAAACGGCAGCCTTGAACCCAGCAACAACATGCCATCAATTTGCTTGGTGATGATCAAATCGATAAAGGTTTTTTCCTGCTGATTTTGATG > NC_000913/4123679‑4124138 | cgcCGAGCGCCATCACATCGCTATGGCAGAAGACAGCAGTAGGCGGTTGTGGAAGATCAAGCAGCTGCTGCATCGCTTTGCTTCCGGCTTCGAAGGTGAAGTCGCCACGGGCGATGTATTGCGGATCAACCATAATGCCGCAGCGACGCAGCGCCTGAACATAGCCTTGCAGGCGGTAGTGACACAGCGGCATCTCTTCGGGACCGGCTATACAGCCAATCCGTTTATGCCCTTGCTCATATAAATAATtg < 1:250391‑M1/251‑3 (MQ=255) ccagagaaataactggctggctgctacacgatgttgccgggcaacgagggagaccgtcatacccggttcaaagctctgctgaacaattgcgatcttttcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactataacttatttaagtgatattggttgtctggagattcagggggccagtctaATAATTTACTGc < 1:81775‑M1/12‑1 (MQ=255) caTCGCTATGGCAGAAGACAGCAGTAGGCGGTTGTGGAAACTCAAGCAGCTGCTGCATCGCTTTGCTTACGGCTTCGAAGGTGAAGTCGCCACGGGAGATGTATTGCGGATCAACCATAATGCCGAAGCGACGAAGCGCCTGAACATAGCCTTGCAGGCGGTAGGGACACAGCGGCATCTCTTCGGGACCGGCCATACAGCCAATCCGTTTATGCCCTTCCTCATCTAAATAATtggatttgcccgatcgg > 1:162105‑M1/1‑234 (MQ=255) gtgagaccgtcatccccggttcaaagctctgctgaacaattgctatcttttcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaATAATTTACTGCATCAAATGCGGCGGt > 1:179737‑M1/192‑218 (MQ=255) ccgtcatccccggttcaaagctctgctgaacaattgcgatcttttcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtcgggagattcagggtgccagtctaATAATTGACTGCATCAAATGCGGCGTTCAGATTGTCGATATGAACTGTAGGCAGCTCCAGCTCCgg > 1:167414‑M1/186‑251 (MQ=255) gtcatccccggttcaaagctctgctgaacaattgcgatcttgtcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtcgaaaaactaggattaagactatcacttatttaagtgatattggttgtctggagattgaggtggccaatcgaAGAATTAACGGCATCGAAGGCGGCGGGCAGATTGTCGATATGAACTGTAGGCAGCTCCAGCTCCGGTg > 1:123320‑M1/184‑251 (MQ=255) tCCGGCTTCGAAGGTGAAGTCGCCACGGGCGATGTATTGCGGATCAACCATAATGCCGCAGCGACGCAGCGCCTGAACATAGCCTTGCAGGCGGTAGTGACACAGCGGCATCTCTTCGGGACCGGCTATACAGCCAAGCCGTTTATGCCCTTGCTCATATAAATAATtggatttgcccctatatttccaggcatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagn < 1:149059‑M1/249‑83 (MQ=255) ggCTTCGAAGGTGAAGTCGCCACGGGCGATGTATTGCGGATCAACCATAATGCCGCAGCGACGCAGCGCCTGAACATAGCCTTGCAGGCGGTAGTGACACAGCGGCATCTCTTCGGGACCGGCTATACAGCCAATCCGTTTATGCCCTTGCTCATATAAATAATtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgata > 1:74173‑M1/1‑164 (MQ=255) cGAAGGTGAAGTCGCCACGGGCGATGTATTGCGGATCAACCATAATGCCGCAGCGACGCAGCGCCTGAACATAGCCTTGCAGGCGGTAGTGACACAGCGGCATCTCTTCGGGACCGGCTATACAGCCAATCCGTTTATGCCCTTGCTCATATTAATAATtggatttgcccctatatttccagacatctgttagcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataaccca < 1:141524‑M1/250‑92 (MQ=255) gCCACGGGCGATGTATTGCGGATCAACCATAATGCCGCAGCGACGCAGCGCCTGAACCTAGCCTTGCAGGCGGTAGTGACACAGCGGCATCTCTTCGGGCCCGGCTATACAGCCAATCCGTTTATGCCCTTGCTCCTATAAATAATtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgccgatattcccgtggcgagcgataacccagcgccctatgcggg > 1:220646‑M1/1‑146 (MQ=255) gttattatccagcaactccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggatgtctggagattcagggggccagtctaATAATTTACTGCATCAAATGCGGCGGTCAGATTGTCGATATTAACTGTATGCAGCTCCATCTCCGGTGCAAATTCGTTCGCCATCACCATCGGCGGCAGATTACGCTGTTCCTCAATGCTg > 1:246902‑M1/131‑251 (MQ=255) gccggctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgagattggttgtctggagattcagggggccagtcgaATAATTTACTGCATCAAATGCGGCGGTCAGATTgtn > 1:48706‑M1/129‑163 (MQ=255) gATCAAACATAATGCCGCAGCGACGCAGCGCCTGAACATAGCCTTGCAGGCGGTAGTGACACAGCGGCATCTCTTCGGGACCGGCTATACAGCCAATCCGTTTATGCCCTTGCTCCTATCAATAATtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctc > 1:38663‑M1/1‑126 (MQ=255) aaCATAGCCTTGCAGGCGGTAGTGACACAGCGGCATCTCTTCGGGACCGGCTATACAGCCAATCCGTTTATGCCCTTGCTCATATAAATAATtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgcaaggttctttgctgccgttaac < 1:222734‑M1/251‑160 (MQ=255) cATAGCCTTGCAGGCGGTAGTGACACAGCGGCATCTCTTCGGGACCGGCTATACAGCCAATCCGTTTATGCCCTTGCTCATATAAATAATtggatttgcccc < 1:9454‑M1/102‑13 (MQ=255) aTAGCCTTGCAGGCGGTAGTGACACAGCGGCATCTCTTCGGGACCGGCTATACAGCCAATCCGTTTATGCCCTTGCTCATATAAATAATtggatttgcccatatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataaggcgcgaacgcctctgcaaggttctttgctgccgttaacccg < 1:17800‑M1/251‑163 (MQ=255) ggCGGTAGTGACACAGCGGCATCTCTTCGGGACCGGCTATACAGCCAATCCGTTTATGCCCTTGCTCATATAAATAATtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgcaaggttctttgctgccgttaacccgtctggtttggn < 1:52744‑M1/251‑174 (MQ=255) aactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaATAATTTACTGCATCAAATGCGGCGGTCAGATTGTCGATAAGAAATGTAGGCAGCTCCAGCTCCGGTGCAAATTCGTTCGCCATCACCATCGGCGGCAGATTACGCTGTTCCTCAATGCTGGCATCAAACGGCAGCCTTGAACCCAGCAACAACATGCCATCAATTTGCTTGGTGATGatcca < 1:207227‑M1/183‑3 (MQ=255) tccgatttatacagccaaTCCGTTTATGCCCTTGCTCATATAAATAATtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgcaaggttctttgctgccgttaacccgtctggtttgggcatgatactgatgtagtcacgctttatcn < 1:153911‑M1/243‑203 (MQ=255) aCAGCCAATCCGTTTATGCCCTTGCTCATATAAATAATtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattaccgtggcgagcgataacccagcgcactatgcggatgccactcgttataatgctcgaacgcctctgcacggtactttgctgccgttaacccgtctggtttgggcatgatactgatgtagtcacgctttatcgttttcacga > 1:246408‑M1/1‑38 (MQ=255) | CGCCGAGCGCCATCACATCGCTATGGCAGAAGACAGCAGTAGGCGGTTGTGGAAGATCAAGCAGCTGCTGCATCGCTTTGCTTCCGGCTTCGAAGGTGAAGTCGCCACGGGCGATGTATTGCGGATCAACCATAATGCCGCAGCGACGCAGCGCCTGAACATAGCCTTGCAGGCGGTAGTGACACAGCGGCATCTCTTCGGGACCGGCTATACAGCCAATCCGTTTATGCCCTTGCTCATATAAATAATTTACTGCATCAAATGCGGCGGTCAGATTGTCGATATGAACTGTAGGCAGCTCCAGCTCCGGTGCAAATTCGTTCGCCATCACCATCGGCGGCAGATTACGCTGTTCCTCAATGCTGGCATCAAACGGCAGCCTTGAACCCAGCAACAACATGCCATCAATTTGCTTGGTGATGATCAAATCGATAAAGGTTTTTTCCTGCTGATTTTGATG > NC_000913/4123679‑4124138 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |