| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,294,035 | Δ141 bp | [tdk] | [tdk] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1294035 | 1294175 | 141 | 6 [0] | [1] 5 | [tdk] | [tdk] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1294034 | 0 (0.000) | 4 (0.420) | 3/278 | 0.7 | 100% | coding (508/618 nt) | tdk | thymidine/deoxyuridine kinase |
| ? | NC_000913 | 1294176 = | 0 (0.000) | intergenic (+32/+1270) | tdk/adhE | thymidine/deoxyuridine kinase/fused acetaldehyde‑CoA dehydrogenase and iron‑dependent alcohol dehydrogenasealdehyde/alcohol dehydrogenase AdhE | |||||
AACCAGACAACAAGTATATGAATTATCGGAGGTTGTCGATCAACTCGATATACCCGTACTTTGTTATGGTTTACGTACCGATTTTCGAGGTGAATTATTTATTGGCAGCCAATACTTACTGGCATGGTCCGACAAACTGGTTGAATTAAAAACCATCTGTTTTTGTGGCCGTAAAGCAAGCATGGTGCTGCGTCTTGATCAAGCAGGCAGACCTTATAACGAAGGTGAGCAGGTGGTAATTGGTGGTAATGAACGATACGTTTCTGTATGCCGTAAACACTATAAAGAGGCGT > NC_000913/1293802‑1294094 | aaCCAGACAACAAGTATATAAATTATCGGATGTTGTCGATCAACTCGATATTCCCTTACTTTGTTATGGTTTTCGTACCGATTTTCGAGGTGAATTATTTATTTGCATCCAATACTTACGGGCATGGTCCGACAAACTTGTTTAATTAAAAACCGTCTTTTTGTGTGGCCGTAAATCAAGCATGGTGCTGTCTCTTTACCAAGCAGGCAGAACTTATAACGAAGGTGAGCAgggtacttttatcctgtcag < 1:44874/251‑19 (MQ=255) caaGTATATGAATTATCGGAGGTTGTCGATCAACTCGATATACCCGTACTTTGTTATGGTTTACGTACCGATTTTCGAGGTGAATTATTTATTGGCAGCCAATACTTACTGGCATGGTCCGACAAACTGGTTGAATTAAAAACCATCTGTTTTTGTGGCCGTAAAGCAAGCATGGTGCTGCGTCTTGATCAAGCAGGCAGACCTTATAACGAAGGTGAGCAGGgcacttttatcctgtcagttcgttttac > 1:202992‑M1/1‑223 (MQ=255) acgcgatATACCCGTACTTTGTTATGGTTTACGTACCGATTTTCGAGGTGAATTATTTATTGGCAGCCAATACTTACTGGCATGGTCCGACAAACTGGTTGAATTAAAAACCATCTGTTTTTGTGGCCGTAAAGCAAGCATGGTGCTGCGTCTTGATCAAGCAGGCAGACCTTATAACGAAGGTGAGCAGGgcacttttatcctgtcagttcgttttacgcacttcttccgggctatatacccttctcggc < 1:69972‑M1/248‑61 (MQ=255) aTTTTCGAGGTGAATTATTTAGTGGCAGCCAATACTTACGGTCATGGTCCGACAAACGGGTTGAATTAAAAACCATCGGTTGTTGAGTCCGTAAAGCAAGCAGTGTGCTACGTGTGGATCAAGCAGGCAGACCTTATAACGAAGGTGAGCAgggcacttttatc < 1:230707/164‑12 (MQ=255) gTGCTGCGTCTTGATCAAGCAGGAAGACCTTATAACGAAGGTGAGCAGGgcacttttatcctgtcagttcgttttacgcacttcttccg > 1:227101‑M1/1‑49 (MQ=255) cAAGCAGGCAGCCCTTATAACGGAGGTGAGCAGGgcacttttatcctgtcagttcgtttgactcacttcttccgggctatatacccttctcggc < 1:217334‑M1/94‑61 (MQ=255) | AACCAGACAACAAGTATATGAATTATCGGAGGTTGTCGATCAACTCGATATACCCGTACTTTGTTATGGTTTACGTACCGATTTTCGAGGTGAATTATTTATTGGCAGCCAATACTTACTGGCATGGTCCGACAAACTGGTTGAATTAAAAACCATCTGTTTTTGTGGCCGTAAAGCAAGCATGGTGCTGCGTCTTGATCAAGCAGGCAGACCTTATAACGAAGGTGAGCAGGTGGTAATTGGTGGTAATGAACGATACGTTTCTGTATGCCGTAAACACTATAAAGAGGCGT > NC_000913/1293802‑1294094 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |