| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC JC | NC_000913 | 568,449 | IS2 (–) +5 bp | coding (135‑139/333 nt) | emrE → | multidrug/betaine/choline efflux transporter EmrE |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 568449 = | 0 (0.000) | 11 (1.090) | 8/298 | 0.2 | 100% | coding (135/333 nt) | emrE | multidrug/betaine/choline efflux transporter EmrE |
| ? | NC_000913 | = 1469240 | NA (NA) | noncoding (1/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | = 568453 | 0 (0.000) | 5 (0.500) | 3/296 | 0.8 | 100% | coding (139/333 nt) | emrE | multidrug/betaine/choline efflux transporter EmrE |
| ? | NC_000913 | 1467910 = | NA (NA) | noncoding (1331/1331 nt) | IS2 | repeat region | |||||
ATGGGAACACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAGTACAATTCTCTCCAGTTTGAACAGGAAAGAATATGCTATGAACCCTTATATTTATCTTGGTGGTGCAATACTTGCAGAGGTCATTGGTACAACCTTAATGAAGTTTTCAGAAGGTTTTACACGGTTATGGCCATCTGTTGGTACAATTATTTGTTATTGTGCATCATTCTGGTTATTAGCTCAGACGCTGGCTTATATTCCTACAGGGATTGCTTATGCTATCTGGTCAGGAGTCGGTATTGTCCTGATTAGCTTACTGTCATGGGGATTTTTCGGCCAACGGCTGGACCTGCCAGCCATTATAGGCATGATGTTGATTTGTGCCGGTGTGTTGATTATTAATTTATTGTCACGAAGCACACCACATTAAAATAATTTGTT > NC_000913/568233‑568658 | gctacaccatgttgccgggcaacgagggagacagtcatccccggttcaaagctctgctgaacaattgcgatcttttcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaGTTATTAGCTCAGACGCTGGCTTATATTCCTAc < 1:91260‑M1/33‑1 (MQ=255) gatgaAACAGGTGAGTTGAGTTCAAACTGTAGTACAATTCTCTCCAGTTTGAACAGGAAAGAATATGCTATGAACCCTTATATTTATCTTGGTGGTGCAATACTTGCAGAGGTCATTGGTACAACCTTAATGAAGTTTTCAGAAGGTTTTACACGGTTATGGCCATCTGTTGGTACAATTATTTGTTATTGTGCATCATTCTGGTTATtggatttgcccctatatttccagacatctgttatcacttaan < 1:160114‑M1/250‑43 (MQ=255) cccggttcaaagctctgctgaacaattgcgatcttttcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtataaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaGTTATTAGCTCAGACGCTGGCTTATATTCCTACAGGGATTGCTTATGCTATCTGGTCAGGAGTCGGTATTGTnc > 1:199576‑M1/178‑251 (MQ=255) gTTTGAACAGGAAAGAATATGCTATGAACCCTTATATTTATCTTGGTGGCGCAATACTTGCAGAGGTCATTGGTACAACCTTAATGAAGTTTTCAGACGGTTTTACACGGTTATGGCCATCTGTTGGTACAATTATTTGTTATTGTGCATCATTCTGGTTATtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacc > 1:222145‑M1/1‑162 (MQ=255) ntgtggtacgccgtctgcgtttctccggccctaagacctcagtcatctgttctccactgaatagtctaaaaactagaattaagactatcacttatttaagtgatattggttgtctggagcttcagggggccagtctaGTTATTAGCTAAGACGCTGGCTTATATTCCTACAGGGATTGCTTATGCTATCTGGTc < 1:32358‑M1/57‑1 (MQ=255) aTACTTGCAGAGGTCATTGGTACAACCTTAATGAAGTTTTCAGAAGGTTTTACACGGTTATGGCCATCTTTTGGTACAATTATTTGTTATTGTGCATCATTCTGGTTATtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgcaaggt < 1:227155‑M1/251‑143 (MQ=255) ntagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaGTTATTAGCTCAGACGCTGGCTTATATTCCTACAGGGATTGCTTATGCTATCTGGTCAGGAGTCGGTATTGTCCTGATTAGCTTACTGTCATGGGGATTTTTCGGCCAACGGCTGGACCTGCCAGCCATTATAGGCATGATGTTGATTTGTGCCGGGGTGTTGATTATTAAttt < 1:152499‑M1/174‑1 (MQ=255) ctatcacttatttaagtgatattggttgtctggagatcaagggggccagtataGTTATTAGCTCAGACGCTGGCTTATATTCCTACAGGGATTGCTTATGCTCTCTGGTCAGGAGTCGGAATTGTCCTGATTAGCTTACTGTCATGGGGATTTTTCGGc < 1:96937‑M1/106‑1 (MQ=255) atcacttatttaagtgatattggttgtctggagattcagggggccagtctaGTTATTAGCTCa < 1:92512‑M1/12‑1 (MQ=255) aagtgatattggttgtctggagattcagggggccagtctaGTTATTAGCTCAGACGCTGGCTTATATTCCTACAGGGATTTCTTATGCTATCTAGTCAGGAGTCGGTATTGTCCTGATTAGCTTACTGGCATGCGGATGTGTCGGCCAACGGCTTGACCTGACAGCCATTATATCCATGATCTTGATTTGTGCCGGTGGGTTGATTATTAATGTATTTTCACGAAGCACACCACATTAAAATAAgttgtt > 1:205922‑M1/41‑250 (MQ=255) aTCTGTTGGTACAATTATTTGTTGTTGTGCATCATTCTGGTTATtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccn < 1:156732‑M1/100‑57 (MQ=255) aTCTGTTGGTACAATTATTTGTTGTTGTGCATCATTCTGGTTATtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccg > 2:156732‑M1/1‑44 (MQ=255) ntgatattggttgtctggagattcagggggccagtctaGTTATTAGCTCAGACGCTGGCTTATATTCCTACAGGGATTGCt < 1:152743‑M1/43‑1 (MQ=255) gtgatattggttgtctggagattcagggggccagtctaGTTATTAGCTCAGACGCTGGCTTATATTCCTACAGGGATTGCt > 2:152743‑M1/39‑81 (MQ=255) tggttgtcgtgagattcagggggccagtctaGTTATTAGCTCAGACGCTg > 1:162709‑M1/32‑50 (MQ=255) ccagtctaGTTATTAGCTCAGACGCTGGCTTATATTCCTACAGGGATTGCTTATGCTATCTGGTCAGGAGTCGGTATTGTCCTGTTTAGCTTACTGTCATGGGGATTTTTCGGCCAACGGCTGGACCTg > 1:141318‑M1/9‑129 (MQ=255) | ATGGGAACACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAGTACAATTCTCTCCAGTTTGAACAGGAAAGAATATGCTATGAACCCTTATATTTATCTTGGTGGTGCAATACTTGCAGAGGTCATTGGTACAACCTTAATGAAGTTTTCAGAAGGTTTTACACGGTTATGGCCATCTGTTGGTACAATTATTTGTTATTGTGCATCATTCTGGTTATTAGCTCAGACGCTGGCTTATATTCCTACAGGGATTGCTTATGCTATCTGGTCAGGAGTCGGTATTGTCCTGATTAGCTTACTGTCATGGGGATTTTTCGGCCAACGGCTGGACCTGCCAGCCATTATAGGCATGATGTTGATTTGTGCCGGTGTGTTGATTATTAATTTATTGTCACGAAGCACACCACATTAAAATAATTTGTT > NC_000913/568233‑568658 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |