| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC JC | NC_000913 | 57,276 | IS2 (+) +5 bp | intergenic (‑167/‑84) | lptD ← / → djlA | lipopolysaccharide assembly protein LptD/co‑chaperone protein DjlA |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 57276 = | 0 (0.000) | 7 (0.690) | 6/298 | 0.3 | 100% | intergenic (‑167/‑88) | lptD/djlA | lipopolysaccharide assembly protein LptD/co‑chaperone protein DjlA |
| ? | NC_000913 | = 382590 | NA (NA) | noncoding (1331/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | = 57280 | 0 (0.000) | 13 (1.280) | 12/298 | 0.0 | 100% | intergenic (‑171/‑84) | lptD/djlA | lipopolysaccharide assembly protein LptD/co‑chaperone protein DjlA |
| ? | NC_000913 | 381260 = | NA (NA) | noncoding (1/1331 nt) | IS2 | repeat region | |||||
GACTATAAAGGGCGGTGGCAATCATGGTGGCCAGGAGAGTGGGGATACGTTTTTTCATACGTTGATTTTATTGTTCCATCATCGGTAACGTTGCGCGTGACAAACGGTCAGAGACTAACGTACTCGTCATCTCTACGCTAGTGTTAATCCTGTCCGAATAGCGTCAGTGGTGTTAGGCACGGCATTGAATGACAGGTATGATAATGCAAATTATAGGCGATGTCCCACAATTGACCGCAGCCGGAAAACGGTAAAAGCACCTTTATATTGTGGGAGATAGCCCTGATATCCGTGTGTCGATTTGGGGAATATATGCAGTATTGGGGAAAAATCATTGGCGTGGCCGTGGCCTTACTGATGGGCGGCGGCTTTTGGGGCGTAGTGTTAGGCCTGTTAATTGGCCATATGTTTGATAAAGCCCGTAGCCGTAAAATGGCGTGGTTCGCCAACCAGCGTGAGCGTC > NC_000913/57052‑57514 | gACTATAAAGGGCGGTGGCAATCATGGTGGCCAGGAGAGTGGGGATACGTTTTTTCATACGTTGATTTTATTGTTCCATCATCGGTAACGTTGCGCGTGACAAACGGTCAGAGACTAACGTACTCGTCATCTCTACGCTAGTGTTAATCCTGTCCGAATAGCGTCAGTGGTGTTAGGCACGGCATTGAATGACAGGTATGATAATGCAAATTATAGGCGATGTCCCACAtagactggccccctgaatctcc < 1:70603‑M1/251‑23 (MQ=255) cagagagcttcgtgaaaacgataaagcgtgactacatcagtatcatgcccaaaccagacgggataccggcagcaaagaaccttgcagaggcgttcgagcattataacgaatggcatccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaCCACAATTGACCGCAGCCGGAAAACGGTaa < 1:219334‑M1/30‑1 (MQ=255) cAATCATGGTGGCCAGGAGAGTGGGGATACGTTTTTTCATACGTTGATTTTATTATTACATCATCGGTACCGCTGCACGTGACACACGGTCAGCGACTAACGTACTCGTCATCTCTACGCTCGTGTTAATCCTGACCGAATAGCGTCAGTGGTGTTAGGCACGGCATTGACTGACAGGTATGATAATGCAAATTATAGGCGATGTCCCACAtagactggccccctgaatctccagacaaccaatatcactt > 1:113629‑M1/1‑211 (MQ=255) gagTGGGGATACGTTTTTTCATACGTTGATTTTATTGTTCCATCATCGGTAACGTTGCGCGTGACAAACGGTCAGAGACTAACGTACTCGTCATCTCTACGCTAGTGTTAATCCTGTCCGAATAGCGTCAGTGTTGTTAGGCACGGCATTGAATGACAGGTATGATAATGCAAATTATAGGCGATGTCCCACAtagactggccccctgaatctccagacaac < 1:122742‑M1/222‑30 (MQ=255) gttaacggcagcaacgaaccttgcagaggcgttcgagcattataacgaatggcatacgcatagtgcgctgggttatagctcgccacgggaatatctgcggaagcgggcttgtaatgggttaagtgataaccgatgtctggaaatataggggcaaatccaCCACAATTGACCGCAGCCGGAAAACGGTAAAAGCACCTTTATATTGTGGGAGATAGCCCTGCTATCCGTGTGTCGATTTGGGGAATATATGc < 1:173780‑M1/92‑1 (MQ=255) cgttcgagcattataacgaatggcatccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaCCACAATTGACCGCAGCCGGAAAACGGTAAAAGCACCTTTATATTGTGGGAGATAGCCCTGATATCCGTGTGTCGATTTGGGGAATATATGCAGTAt < 1:61081‑M1/97‑1 (MQ=255) ngtGACAAACGGTCAGAGACTAACGTCCTCGTCATCTCTACGCTAGTGTTAATCCTGTCCGAATAGCGTCAGTGGTGTTAGGCACGGCATTGAATGACAGGTATGATAATGCAAATTATAGGCGATGTCCCACAtagactggccccctgaatctccagac > 1:152683‑M1/2‑134 (MQ=255) gACAAACGGTCAGAGACTAACGTACTCGTCATCTCTACGCTAGTGTTAATCCTGTCCGAATAGCGTCAGTGGTGTTAGGCACGGCATTGAATGACAGGTATGATAATGCAAATTATAGGCGATGTCCCACAtagacgtgcccccagaatctccagacaaccaatatcacttaaataagttatagtcttaatactactttttagactagtcattggagaacagatgattgatgtctgagggccggagaaacg < 1:186846‑M1/251‑121 (MQ=255) gACAAACGGTCAGAGACTAACGTACTCGTCATCTCTACGCTAGTGTTAATCCTGTCCGAATAGCGTCAGTGGTGCTAGGCACGGCATTGAATGACAGGTATGATAATGCAAATTATAGGCGATGTCCCACAtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtcttagggccggagaaacg > 1:62593‑M1/1‑131 (MQ=255) nnagnnnNNCGTNCTCGTCATCTCTACGCTAGTGTTAATCCTGTCCGAATAGCGTCAGTGGTGTTAGGCACGGCATTGAATGACAGGTATGATAATGCAAATTATAGGCGATGTCCCTCAtagactggccccctgaatctccagac < 2:152683‑M1/144‑27 (MQ=255) ccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagagggcttgtcatgggttccgtgataacagatgtctggaaatataggggcaaatccaCCACAATTGACCGCAGCCgg < 1:241047‑M1/20‑1 (MQ=255) gTCATCTCTACGCTAGTGTTAATCCTGTCCGAATAGCGTCAGTGGTGTTAGGCACGGCATTGAATGACAGGTATGATAATGCAAATTATAGGCGATGTCCCACAtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtcttagggccggagaaacgcagacggcgtaccacacaggaaa > 1:234561‑M1/1‑104 (MQ=255) gcnctgngnnanngctngccacgggaatatctgcggcanngggcttgtantgggttaagtgataacagatgtctggaaatataggggcaaatccaCCACAATTNACCGCAGCCNNAANACGGTNANNNCNNNTTNATATTGTGGGAGATAGCCCNGANNTCCGTGNGTCGATTTGGGGAATATATGCAGTAt > 2:61081‑M1/96‑192 (MQ=255) cGCTAGTGTTCTTGCTGTCCGAATAGCGTCAGTGGTGTTAGGCACGGCATTGAATGACAGGTATGATAATGCAAATTATAGGCGATGTCCCACAt > 1:200861‑M1/1‑94 (MQ=255) cTAGTGTTAATCCTGTCCGAATAGCGTCAGTGGTGTTAGGCACGGCATTGAATGACAGGTATGATAATGCAAATTATAGGCGATGTCCCACAtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtcttagggccggagaaacgcagacggcgtaccacacaggaaaagatcgcaattgttc > 1:14185‑M1/1‑92 (MQ=255) ggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaCCACAATTGACCGCAGCCGGAAAACGGTAAAAGCACCTTTATATTGTGGGAGATAGCCCTGATATCCGTGTGTCGATTTGGGGAATATATGCAGTATTGGTGAAAAATCATTGGCGTGGCCGGGGCCTTACTGATGGGCGGCGGCTTTTGGGGCGTAGTGTTAGGCCTGTTAATTGGcc > 1:17067‑M1/73‑251 (MQ=255) ggCACGGCATTGAATGACAGGTATGATAATGCAAATTATAGGCGATGTCCCACAtagactggccccct < 1:92638‑M1/68‑15 (MQ=255) tGNCAGNTNNGNNAATNCAAATTATAGGCGATGTCCCANNtagactggcnccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactngtttttagannagncattgnannncnnntgnttgatgtcttagggccgganaanngcagacngcgtaccacacaggaaaagatcgcaa < 2:62593‑M1/192‑153 (MQ=255) ngcaaatccaCCACAATTGACCGCAGCCGGAAAACGGTAAAAGCACCTTTATATTGTGGGAGATAGCCCTGATATCCGTGTGTCGATTTGGGGAATATATGCAGTATTGGGGAAAAATCATTGGCGTGGCCGTGGCCTTACTGATGGGCGGCGGCTTTTGGGGCGTAGTGTTAGGCCTGTTAATTGGCCATATGTTTGATAAAGCCCGTAGCCGTAAAATGGCGTGGTTCGCCAACCAGCGTGAGCGTc < 1:50277‑M1/239‑1 (MQ=255) ggCGATGTCCCACAtagactgcccccctgaatctccagacaaccaatatcacttacataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgctgtcttagggccggtgcaacgcagacggcgtaccacacaggaaaagatcgcaattgttcagcagagctttgaaccggggatgacggtctccctcgttgcccgg > 1:82014‑M1/1‑14 (MQ=255) cacaATTGNCNNNANNCGGAAAACGGTAAAAGCACCTTTATATTGTGGGAGATAGCCCTGNTATACGTGTGTAGATNTGNGGAANATANGCAGTATTGGGGAAAAATCATTGGcgtggccgtggc > 2:178461/1‑125 (MQ=255) cacaATTGACCGCAGCCGTAAAACGGTAAAAGCACCTTTATATTGTTGGAGATAGCCCTGATATCCGTGTGTCGATTTGGGGAATATATGCAGTATTGGGGAAAAATCATTGGcgtggccgtggc < 1:178461/125‑1 (MQ=255) | GACTATAAAGGGCGGTGGCAATCATGGTGGCCAGGAGAGTGGGGATACGTTTTTTCATACGTTGATTTTATTGTTCCATCATCGGTAACGTTGCGCGTGACAAACGGTCAGAGACTAACGTACTCGTCATCTCTACGCTAGTGTTAATCCTGTCCGAATAGCGTCAGTGGTGTTAGGCACGGCATTGAATGACAGGTATGATAATGCAAATTATAGGCGATGTCCCACAATTGACCGCAGCCGGAAAACGGTAAAAGCACCTTTATATTGTGGGAGATAGCCCTGATATCCGTGTGTCGATTTGGGGAATATATGCAGTATTGGGGAAAAATCATTGGCGTGGCCGTGGCCTTACTGATGGGCGGCGGCTTTTGGGGCGTAGTGTTAGGCCTGTTAATTGGCCATATGTTTGATAAAGCCCGTAGCCGTAAAATGGCGTGGTTCGCCAACCAGCGTGAGCGTC > NC_000913/57052‑57514 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |