breseq  version 0.39.0   mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Marginal read alignment evidence
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	579,099	0	A	.	55.6%	5.9 / 15.9	10	intergenic (‑206/+85)	borD/ybcV	prophage lipoprotein BorD/DUF1398 domain‑containing protein YbcV
*	NC_000913	578,427	0	G	C	50.0%	‑6.3 / 20.9	18	T107T (ACG→ACC)  R34P (CGG→CCG)	rzpD rzoD	putative prophage endopeptidase RzpD putative prophage lysis lipoprotein RzoD
*	NC_000913	1,634,661	0	C	G	50.0%	‑5.4 / 11.1	10	T75T (ACG→ACC)	tfaQ	putative tail fiber assembly protein TfaQ
*	NC_000913	580,119	0	A	G	46.2%	‑6.7 / 13.0	14	intergenic (+33/+132)	ybcW/ylcI	uncharacterized protein YbcW/DUF3950 domain‑containing protein YlcI
*	NC_000913	1,429,164	0	C	G	45.5%	‑2.0 / 14.3	11	A39G (GCC→GGC)	stfR	putative prophage side tail fiber protein StfR
*	NC_000913	1,429,682	0	T	G	45.5%	‑1.0 / 16.3	11	S212A (TCA→GCA)	stfR	putative prophage side tail fiber protein StfR
*	NC_000913	1,429,780	0	A	G	45.5%	‑4.2 / 11.3	11	E244E (GAA→GAG)	stfR	putative prophage side tail fiber protein StfR
*	NC_000913	581,042	0	T	G	36.8%	12.9 / 12.8	19	L70R (CTG→CGG)	nohD	putative DNA‑packaging protein NohD
*	NC_000913	566,565	0	A	G	35.7%	0.1 / 10.5	14	intergenic (‑587/‑119)	intD/renD	putative integrase/protein RenD
*	NC_000913	566,530	1	.	T	33.3%	0.4 / 10.2	9	intergenic (‑552/‑154)	intD/renD	putative integrase/protein RenD
*	NC_000913	581,056	0	A	G	33.3%	14.9 / 12.5	21	T75A (ACA→GCA)	nohD	putative DNA‑packaging protein NohD