| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,168,802 | G→A | E31K (GAA→AAA) | yegS → | lipid kinase YegS |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,168,802 | 0 | G | A | 92.9% | 26.7 / ‑3.4 | 14 | E31K (GAA→AAA) | yegS | lipid kinase YegS |
| Reads supporting (aligned to +/- strand): ref base G (1/0); new base A (6/7); total (7/7) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.05e-01 | |||||||||||
GGTAACCACTGAATCCTCCATACTTGAACTGACTTTTTATCCTCCGACTTTCATCCTGTTCTGACTCCACCTTTTGTTTTCTGCTCTACACTATCTACAGACCAATCATAAAGGCACATACGATCATGGCAGAATTTCCCGCCAGCTTACTGATTCTTAATGGCAAAAGTACTGACAATCTACCCTTGCGCGAAGCAATTATGCTGTTGCGTGAGGAAGGAATGACGATCCATGTGCGGGTCACCTGGGAGAAAGGCGATGCCGCACGATATGTAGAGGAGGCCCGGAAGTTTGGCGTCGCAACGGTGATTGCCGGTGGTGGCGATGGCACCATTAATGAAGTTTCTACGGCGTTGATTCAGTGTGAGGGGGATGACATACCCGCGCTGGGAATTTTGCCATTAGGAACCGCCAATGATTTTGCCACCAGTGT > NC_000913/2168587‑2169019 | ggtAACCACTGAATCCTCCATACTTGAACTGACTTTTTATCCTCCGACTTTCATCCTGTTCTGACTCCACCTTTTGTTTTCTGCTCTACACTATCTACAGACCAATCATAAAGGCACATACGATCATGGCAGAATTTCCCGCCAGCTTACTGATTCTTAATGGCAAAAGTACTGACAATCTACCCTTGCGCGAAGCAATTATGCTGTTGCGTGAGAAAGGAATg < 1:80781/224‑1 (MQ=255) cTGAATCCTCCATACTTGAACTGACTTTTTATACAACGACTTTCATCCTGTTCTGACTCCACCTTTTGTTTTATGCTCTAAACTATCTACAGACCAATCATAAAGGCACATACGATCATGGCAGAATTTCCCGCCAGCTTACTGATTCTTAATGGCAAAAGTACTGACAATCTACCCTTGCGCGAAGCAATTATGCTGTTGCGTGAGAAAGGAATGACGATCCATGTGCGGGTCACCTGGGAGAAAGGCg > 1:146917/1‑250 (MQ=255) ctccATACTTGAACTGACTTTTTATCCTCCGACTTTCATCCTGTTCTGACTCCACCTTTTGTTTTCTGCTCTACACTATCTACAGCCCAATCATAAAGGCACATACGATCATGGCAGAATTTCCCGCCAGCTTACTGATTCTTAATGGCAAAAGTACTGACAATCTACCCTTGCGCGAAGCAATTATGCTGTTGCGTGAGAAAGGAATGACGATCCATGTGCGGGTCACCTGGGAGAAAGGCGATGCCGc > 1:155117/1‑250 (MQ=255) gACTCCACCTTTTGTTTTCTGCTCTACACTATCTACAGACCAATCATAACGGCACATACGATCATGGCAGAATTTCCCTCCAGCTTACTGATTCTTAATGGCAAACGTACTGACACTCTACCCTTGCGCGAAACAATTATGCTGTTACGTGAGAAAGGAATGACGATCCATGTGCGGGTCACCTGGGAGACAGGCGATGCCGCACGATCTGTAGAGGAGGCACGGAAGTTTGGCGTCGCAACGGCGATTGc > 1:131271/1‑251 (MQ=255) cAATCATAAAGGCACATACGATCATGGCAGAATTTCCCGCCAGCTTACTGATTCTTAATGGCAAAAGTACTGACAATCTACCCTTGCGCGAAGCAATTATGCTGTTGCGTGAGAAAGGAATGACGATCCATGTGCTGGTCACCTGGGAGAAAGGCGATGCCGCACGATATGTAGAGGAGGCCCGGAAGTTTGGCGTCGCAACGGTGATTGCCGGTGGTGGCGATGGCACCATTAATGAAGTTTCTACGGCg < 1:119070/251‑1 (MQ=255) ngcnnctatngtgtctgctgttCCCGCCAGCTAANGGATTCTTAATGGCAAAAGTACAGACAATCTNCNCGTGCGCGAAGCAATTATGCTGTGGCGTGAGAAAGGAATGACGATCCANGTGCGGGTCANCTGNNAGAANGNCNATGCCGCCCGATATGTAGAGGATGCCCGGNAGTTTGGCGTCGCAACGGTGAGTNNCGNNNGTNNCGATg < 2:131271/192‑1 (MQ=255) acaTACGATCATGGCAGAATTTCCCGCCAGCTTACTGATTCTTAATGGCAAAAGTACTGACAATCTACCCTTGCGCGAAGCAATTATGCTGTTGCGTGAGAAAGGAATGACGATCCATGTGCGGGTCACCTGGnag > 2:108160/1‑136 (MQ=255) tGGCAGAATTTCCCGCCAACTTACTGATTCTGAATGGCAAAACGACTGACAATCTTCCCTTGCGCGAAGCATTGATTCTGTGGCGTGAGAAAGGAATGACGTGCCATGTTCTGTTCACCTGGGAGAAAGGCGATGCCGCACTATATGTAGAGGAGGCCCGGAAGttt < 1:169620/167‑1 (MQ=255) aGAATTTCCCGCCAGCTTACTGATTCTTAATGGCAAAAGTACTGACAATCTACCCTTGCGCGAAGCAATTATGCTGTTGCGTGAGAAAGGAATGACGATCCATGTGCGGGTCACCTGGGAGAAAGGCGATGCCGCACGATATGTAGAGGAGGCCCGGAAGTTTGGCGTCGCAACGGTGATTGCCGGTGGTGGCGATGGCACCATTAATGAAGTTTCTACGGCGTTGATTCAGTGTGAGGGGGATGACATAc < 1:1952/251‑1 (MQ=255) tACTGATTCTTAATGGCAAAAGTACTCACAATCTACCCTTGCGCGAAGCAATTATGCCGTAGCGTGAGAAAGGAATGACGATCCATCTGCGGGTCACATGGGAGAACGGCGATGACGCACGATATGTAGAGGAGGCCCGGAAGTTTGGCCTCGCAACGGTGATTGCCGGTGGTGGCGATAGCACCATTAATGAAGTTTCTACGGCGTTGATTCAGTGTGAGGGGGATGACATACCCGCGCTGGGAATTTTg > 1:77540/1‑251 (MQ=255) aCTGATTCTTAATGGCAAAAGTACTGGCAATCTAACCGTGCGCGAAGCAAGGATGCTGTTGCGGGAGAAAGGAATGACGACCCATGTGCGGGTCACCTGGGAGAAAGGCGATGCCGCACGATAGGTAGAGGAGGCGCGGAAGTTTGGTGTCGTATCGGTGATTGCCGGTGGTGGCTATGGCAGCATTAATGAAGTTTCTAGGGCGTTGATTCAGTGTGAGGGGGATGACATACCCGCTCTGGGAATTTTg < 1:130824/250‑1 (MQ=255) tAATGGCAAAAGTACTGACAAGCTACCCTTGCGCGAAGCAATTATGCTGTTGCGTGAGAAAGGAATGACGATCCATGTGCGGGTCACCTGGGAGAAAGGCGATGGCGCACGAGATGTAGAGGAGGCCCGGAAGTTTGGCGTCGCAACGGTGATGGCCGGTGGTGGCGATGGCACCAGTAATGAAGTGTCTACGGCGTTGATTCAGTTTGATGGGGATGACATACCCGCGCTGGGAATTTTGCCATTAg < 1:65555/248‑1 (MQ=255) cAAAAGTACTGACAATCTACCCTTGCGCGAAGCAATTATGCTGTTGCGTGAGGAAGGAATGACGATCCATGTGCGGGTCACCTGGGAGAAAGGCGATGCCGCACGATATGTAGAGGAGGCCCGGAAGTTTGGCGTCGCAACGGTGATTGCCGGTGGTGGCGATGGCACCATTAATGAAGTTTCTACGGCGTTGATTCAGTGTGAGGGGGATGACATACCCGCGCTGGGACTTTTGCCATTAGGAACCGcc > 1:3122/1‑250 (MQ=255) ccTTGCGCGAAGCAATTATGCTGTTGCGTGAGAAAGGAATGACGATCCATGTGCGGGTCACCTGGGAGAAAGGCGATGCCGCACGATATGTAGAGGAGGCCCGGAAGTTTGGCGTCGCAACGGTGATTGCCGGTGGTGGCGATGGCACCATTAATGAAGTTTCTACGGCGTTGATTCAGTGTGAGGGGGATGACATACCCGCGCTGGGAATTTTGCCATTAGGAACCGCCAATGATTTTGCCACCAgtgt > 1:84750/1‑250 (MQ=255) | GGTAACCACTGAATCCTCCATACTTGAACTGACTTTTTATCCTCCGACTTTCATCCTGTTCTGACTCCACCTTTTGTTTTCTGCTCTACACTATCTACAGACCAATCATAAAGGCACATACGATCATGGCAGAATTTCCCGCCAGCTTACTGATTCTTAATGGCAAAAGTACTGACAATCTACCCTTGCGCGAAGCAATTATGCTGTTGCGTGAGGAAGGAATGACGATCCATGTGCGGGTCACCTGGGAGAAAGGCGATGCCGCACGATATGTAGAGGAGGCCCGGAAGTTTGGCGTCGCAACGGTGATTGCCGGTGGTGGCGATGGCACCATTAATGAAGTTTCTACGGCGTTGATTCAGTGTGAGGGGGATGACATACCCGCGCTGGGAATTTTGCCATTAGGAACCGCCAATGATTTTGCCACCAGTGT > NC_000913/2168587‑2169019 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |