| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,025,376 | C→T | intergenic (‑63/‑135) | dsrA ← / → yedP | small regulatory RNA DsrA/putative mannosyl‑3‑phosphoglycerate phosphatase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,025,376 | 0 | C | T | 90.9% | 26.0 / NA | 11 | intergenic (‑63/‑135) | dsrA/yedP | small regulatory RNA DsrA/putative mannosyl‑3‑phosphoglycerate phosphatase |
| Reads supporting (aligned to +/- strand): ref base C (0/0); major base T (4/6); minor base G (0/1); total (4/7) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CTGGATATTCATGACTTCAGCGTCTCTGAAGTGAATCGTTGAATGCACAATAAAAAAATCCCGACCCTGAGGGGGTCGGGATGAAACTTGCTTAAGCAAGAAGCACTTAAAAAATTCGTTACACCAGGAAATCTGATGTGTTCATCACCTTATCCGCAATTTTTTTCGCTGACAAGAAAATATTCGCCATATGAATGATTAACGCTACTTATGAATAGAAATGTGACGCACGTCACCCCTTGGTGGCTCTGGCGTCAGCGGGATCGCTCCCGAAAAAATCATCTTTGATAATTTGTGCGGTTTTGAGAATCATCCTGGTAAGAGGAGTACTGCGCGACTATGTTTTCAATTCAACAACCACTACTGGTTTTTAGCGATCTTGATGGCACCCTGCTGGACAGTCAT > NC_000913/2025172‑2025576 | ntGGATATTCATGACTTCAGCGTCTCTGAAGTGAATCGTCGAATGCACAATAAAAAAATCCCGAACCTGCGGGGGTCGGGATGCAACTTGCTTAAGCAAGAAGCACTTACAAAATTCGTTACACCAGGAAATCTGATGTGTTCCTCACCTTATCCGCAATTTTTTTCGCTGACAAGAAAATATTCGCCATATGAATGATTAACGTTACTTATGAATAGAAATGTGACGCACGTCACCCCTTGGTGGCTCTg > 1:18637/2‑251 (MQ=255) ctGAAGTGAATCGTTGAATGCACAATAAAAAAATCCCGACCCTGAGGGGGTCGGGATGAAACTTGCTTAAGCAAGAAGCACTTAAAAAATTCGTTACACCAGGAAATCTGATGTGTTCATCACCTTATCCACAATTTTTTTCGCTGACAAGAAAATATTCGCCATATGAATGATTAACGTTACTTATGAATAGAAATGTGACGCACGTCACCCCTtggtggn < 1:33427/222‑2 (MQ=255) aaaaaaaTCCCGACCCTGAGGGGGTCGGGATGAAACTTGCTTAAGCAAGAAGCACTTAAAAAATTCGTTACACCAGGAAATCTGATGTGTTCATCACCTTATCCGCAATTTTTTTCGCTGACAAGAAAATATTCGCCATATGAATGATTAACGTTACTTATGAATAGAAATGTGACGCACGTCACCCCTTGGTGGCTCTGGCGTCAGCGGGATCGCTCCCGAAAAAATCATCTTTGATAATTTGTGCGGt < 1:80893/250‑1 (MQ=255) ggggTCGGGATGAAACTTGCTTAAGCAAGAAGCACTTAAAAAATTCGTTACACCAGGAAATCTGATGTGTTCATCACCTTATCCGCAATTTTTTTCGCTGACAAGAAAATATTCGCCAGATGAATGATTAACGTTACTTATGAATAGAAATGTGACGCACGTCACCCCTTGGTGGCTCTGGCGTCAGCGGGATCGCTCCCGAAAAAATCATCTTTGATAATTtg < 1:157557/224‑1 (MQ=255) cACTTAAAAAATTCGTTACACCAGGAAATCTGATGTGTTCATCACCTTATCCGCAATTTTTTTCGCTGACAAGAAAATATTCGCCATATGAATGATTAACGTTACTTATGAATAGAAATGTGACACACGTCACCCCTTGGTGGCTCTGGCGTCAGCGGGATCGCTCCCGAAAAAATCATCTTTGATAATTTGTGCGGTTTTGAGAATCATCCTGGTAAGAGGAGTACTGCGCGACTATGTTttcaattca > 1:37706/1‑250 (MQ=255) acCAGTAAATCTGATGTGTTCATAACCTTATCCGCACTTTTTTTCGCTGACAAGACAATATTCGCCATCTGACTGATTAACGTTACTTATGAATAGAAATGTGACGCACGTCACCCCTTGGTGGCTCTGGCGTCAGCGGGATCGCTCCCGAAACAATCATCTTTGATAATTTGTGCGGTTTTGAGAATCATCCTGGTAAGAGGAGTACTGCGCGACTATGTTTTCAATTCAACAACCCCTACTGGttttt > 1:56051/1‑250 (MQ=255) aTGTGTTCATCACCTTATCCGCAAGTTTTTTCGCTGACAAGAAAATATTCGCCATATGAAGGATTAACGTTACTTATGAATAGAAATGTGACGCACGTCACTCCTTGGTGGCTCTGGCGGCAGCGGGGTCGCTCCCGAAAAAATCATCTGTGATAAGTTTTGCGGTTTTGAGATTCATCCTGGTAAGAGGAGTACTGCGCGTCTATGTTTTCAGTTCAACAACCACTACTGGTTTTTAGCGATCTTGATgg < 1:72268/251‑1 (MQ=255) gtgtTCATCACCTTATCCGCAATTTTTTTCGCTGACAAGAAAATATTCGCCATATGAATGATTAACGTTACTTATGAATAGAAATGTGACGCACGTCACCCCTTGGTGGCTCTGGCGTCAGCGGGATCGCTCCCGAAAAAATCATCTTTGATAATTTGTGCGGTTTTGAGAATCATCCTGGTAAGAGGAGTACTGCGCGACTATGTTTTCAATTCAACAACCACTACTGGTTTTTAGCGATCTTGATggn < 1:42266/250‑2 (MQ=255) cTTATCCGCAATTTTTTTCGCTGACAAGAAAATATTCGCCATATGAATGATTAACGTTACTTATGAATAGAAATGTGACGCACGTCACCCCTTGGTGGCTCTGGCGTCAGCGGGATCGCTCCCGAAAAAATCATCTTTGATAATTTGTGCGGTTTTGAGAATCATCCTGGTAAGAGGAGTACTTCGCGACTATGTTTTCAATTCAACAACCACTACTGGtttn < 1:30878/223‑2 (MQ=255) gCAATTTTTTTCGCTGACAAGAAAATATTCGCCATATGAATGATTAACGTTACTTATGAATAGAAATGTGACGCACGTCACCCCTTGGTGGCTCTGGCGTCAGCGGGATCGCTCCCGAAAAAATCATCTTTGATAATTTGTGCGGTTTTGAGAATCATCCTGGTAAGAGGAGTACTGCGCGACTATGTTTTCAATTCAACAACCACTACTGGTTTTTAGCGATCTTGATGGCACCCTGCTGGACAGTCAt > 1:83839/1‑250 (MQ=255) cATATGAATGATTAACGGTACTTATGAATAGAAATGTGACGCACGTCACCCCTTGGTGGCTCTGGCGTCAGCGGGAtn < 1:18392/78‑2 (MQ=255) | CTGGATATTCATGACTTCAGCGTCTCTGAAGTGAATCGTTGAATGCACAATAAAAAAATCCCGACCCTGAGGGGGTCGGGATGAAACTTGCTTAAGCAAGAAGCACTTAAAAAATTCGTTACACCAGGAAATCTGATGTGTTCATCACCTTATCCGCAATTTTTTTCGCTGACAAGAAAATATTCGCCATATGAATGATTAACGCTACTTATGAATAGAAATGTGACGCACGTCACCCCTTGGTGGCTCTGGCGTCAGCGGGATCGCTCCCGAAAAAATCATCTTTGATAATTTGTGCGGTTTTGAGAATCATCCTGGTAAGAGGAGTACTGCGCGACTATGTTTTCAATTCAACAACCACTACTGGTTTTTAGCGATCTTGATGGCACCCTGCTGGACAGTCAT > NC_000913/2025172‑2025576 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |