| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC JC | NC_000913 | 2,406,780 | IS1 (–) +8 bp | intergenic (‑139/‑774) | lrhA ← / → alaA | DNA‑binding transcriptional dual regulator LrhA/glutamate‑‑pyruvate aminotransferase AlaA |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1978503 = | NA (NA) | 13 (1.760) | 11/314 | 0.0 | 100% | noncoding (768/768 nt) | IS1 | repeat region |
| ? | NC_000913 | = 2406787 | 0 (0.000) | intergenic (‑146/‑774) | lrhA/alaA | DNA‑binding transcriptional dual regulator LrhA/glutamate‑‑pyruvate aminotransferase AlaA | |||||
| * | ? | NC_000913 | = 1979270 | NA (NA) | 14 (1.880) | 11/316 | 0.0 | 100% | noncoding (1/768 nt) | IS1 | repeat region |
| ? | NC_000913 | 2406780 = | 0 (0.000) | intergenic (‑139/‑781) | lrhA/alaA | DNA‑binding transcriptional dual regulator LrhA/glutamate‑‑pyruvate aminotransferase AlaA | |||||
GCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATTATCGGACGATTTGCACTTATCATATATTATCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCCTTGTTCCACTCTCGTGCAGCATCGCTGGTCATACGCGAACACGTACCAACAGCAATGGTGAGGCGGCATCAAGAGCAGGGATCCGTCATTTATCCGAGCATTTTACCCC > NC_000913/2406553‑2407028 | gcagcaAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATTATCGGACGATTTGCACTTATCATATATTATCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAAAAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCggtaatgactccaact < 1:164724‑M2/251‑17 (MQ=255) ggCAACAGCAACAAATGTTCTCAGCAGATCGCGGTCGAGGTTAATTATCGGCCGATTTGCACTTATCATATATTATCACTTACTGGCGGCTCATCCTGAGCTGGTTAATGCTGCGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCggtaatgactccaac < 1:73953‑M2/230‑16 (MQ=255) gagagcagagatagcgctgatgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTc < 1:47436‑M2/96‑1 (MQ=255) tGCACTTATCATATATTATCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCggtaatgacgccaacttattgatag > 1:52595‑M2/1‑158 (MQ=255) gcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgctagaacaagaagccactgcagcccctcaaaaacaccatcatacactaactcagtaagttggcagcatcaccAAAAATGCGACTCACATTGTTCCGTTATCATGCCTGCAGTAGATCACAGCATATATCTTCCGGGATCGCTTCTCTATTAAGTTCCTCACTCTTTTCTCTTTATGACATGCGCGTGTTTGTAtaaatg > 1:94516‑M2/125‑251 (MQ=255) ggcggcTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATGTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAAGGCATATGAGTTGCACTAAAAAAGCtgtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactgtgtcatgcagcgccacctaggttgagaacgacagcgacttccgtcccagccgtgccaggtg > 1:88909‑M2/1‑131 (MQ=255) ggcTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGACTCCCTGGCAGTTTCATCCGGAAACCGGACGAAAGAAAAAATGCATATGCGTTGCACTAAAAAAGCggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcct < 1:114001‑M2/251‑124 (MQ=255) gcTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctc < 1:6857‑M2/251‑125 (MQ=255) nttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagaaagttggcagcatcaccAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTAAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATGCGCGTGTTTGTATAAATGTAAAtgtg > 1:34523‑M2/116‑250 (MQ=255) gCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggtt < 1:2509‑M2/251‑136 (MQ=255) gctgaacaggcgggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatccgtaagttgacagcatcaccAAAAAAGCGACTCCCATTGTTCCGTta > 1:155929‑M2/94‑120 (MQ=255) gTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCggtaatgactccaacttattgatagtgttttatgtgcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgan > 1:31074‑M2/1‑56 (MQ=255) ctcaaaaacaccatcatacactaaatcagtaagttggccgcatcaccAAACAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCCTTGTTCCACTCTCGTGCAGCATCGCTGGTCATACGCGAACACGTACCAACAGCAATGGTGAggc > 1:66263‑M2/48‑251 (MQ=255) caaaaacaccatcatacactaaatcagtaagttggcagcatcaccAAAAAAGCGACTCACATTGTTCAGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCCTTGTTCCACTCTCGTGCAGCATCGCTGGTCATACGCGAACACGTACCAACAGCAATGGTGAggcgg > 1:168711‑M2/46‑251 (MQ=255) accatcatacactaaatcagtaagttggcagcatcaccAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGATTCCGTGTTCCACTCGCGTACAGCATCGCTGGTCATTCGCGAACACGTACCATCAGCAATGGTGAGGCGGCATCAag < 1:141918‑M2/213‑1 (MQ=255) cccGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCggtaatg < 1:259‑M2/50‑8 (MQ=255) tAAAAATGCATATGAGTTGCACTAAAAAAGCggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattt > 2:107629‑M2/1‑31 (MQ=255) naaaaatGCATATGAGTTGCACTAAAAAAGCggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattt < 1:107629‑M2/108‑79 (MQ=255) ggcagcatcaccAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCCTTGTTCCACTCTCGTGCAGCATCGCTGGTCATACGCGAACACGTACCAACAGCAATGGTGAGGCGGCATCAAGAGCAGGGATCCGTCATTTATCCGAg < 1:46601‑M2/238‑1 (MQ=255) ggcagcatcaccAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTGTTCTATTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCCTTGTTCCACTCTCGTGCAGCATCGCTGGTCATGCGCGAACACGTACCAACAGCAATGGTTAGGCGGCATCAAGAGCAGGGATCCGTCATTTATCCGAGc < 1:155405‑M2/239‑1 (MQ=255) nagTTGCACTAAAAAAGCggtaatgactccaacttattgatagtgttttntgttcagatantgcnngatgncntngtcatgcagctccaccgattttgagaacgncagcgacttccgtcccagccgtgnnagnnnctnnctcag > 2:127908‑M2/2‑18 (MQ=255) gAGTTGCACTAAAAAAGCggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcag < 1:127908‑M2/144‑127 (MQ=255) gcatcaccAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCTCAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTAGTTATGACATGCGCGTGTTTGTATAAATGTAAAGGTGAGTCCTTGTTCCACTCTCTTGCAGCATCGCTGGTCATACGCGAACACGTACCAACAGCAATGGTGAggcg < 1:66234‑M2/205‑1 (MQ=255) caccAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAgtn < 1:42185‑M2/139‑2 (MQ=255) cAAACAAGCGACTCACATTGTTCCGTTATAATGCCAGAAGTAGATCACAGAATACATCTTCAGGGATCGAATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCCTTGTTCCACTCTCGTGCAGCATCGCTGGTCATACGCGAACACGTACCAACAGCCATGGTGAGGCGGCATCAAGAGCAGGGATCCGTCATTTATCCGAGCATTTTAcccc > 1:74576‑M2/2‑250 (MQ=255) | GCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATTATCGGACGATTTGCACTTATCATATATTATCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCCTTGTTCCACTCTCGTGCAGCATCGCTGGTCATACGCGAACACGTACCAACAGCAATGGTGAGGCGGCATCAAGAGCAGGGATCCGTCATTTATCCGAGCATTTTACCCC > NC_000913/2406553‑2407028 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |