New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 41351841 (0.130)6 (0.810) 6/316 0.2 85.7% coding (1350/2181 nt) katG catalase/hydroperoxidase HPI
?NC_000913 = 4499511 NA (NA)noncoding (1331/1331 nt) IS2 repeat region

CCGGAAGTGCCGAAAGAAGATCTGATCTGGCAAGATCCGCTGCCGCAGCCGATCTACAACCCGACCGAGCAGGACATTATCGATCTGAAATTCGCGATTGCGGATTCTGGTCTGTCTGTTAGTGAGCTGGTATCGGTGGCCTGGGCATCTGCTTCTACCTTCCGTGGTGGCGACAAACGCGGTGGTGCCAACGGTGCGCGTCTGGCATTAATGCCGCAGCGCGACTGGGATGTGAACGCCGCAGCCGTTCGTGCTCTGCCTGTTCTGGAGAAAATCCAGAAAGAGTCTGGTAAAGCCTCGCTGGC  >  NC_000913/4135107‑4135411
                                                                             |                                                                                                                                                                                                                                   
ccGGAAGTGCCGAAAGAAGATCTGATCTGGCAAGATCCGCTGCCGCAGCCGATCTACAACCCGACCGAGCAGGACATTtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtgtcgagcgataacccagcgcactattcggatgccattcgttataatgctcgaacgcctctgcaaggttcgttgctgccgttaacccgtctggtttggg                                                        <  1:110832‑M1/251‑174 (MQ=255)
 cGGAAGTGCCGAAAGAAGATCTGATCTGGCAAGATCCGCTGCCGCAGCCGATCTACAACCCGACCGAGCAGGACATTtggatttgcccctatatttccagacatctgttatcacttaacccatt                                                                                                                                                                                      >  1:24316‑M1/1‑77 (MQ=255)
            aaaGAAGATCTGATCTGGCAAGATCCGCTGCCGCAGCCGATCTACAACCCGACCGAGCAGGACATTtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccg                                                                                                                                                                             >  1:90623‑M1/1‑66 (MQ=255)
                                         gCCGCAGCCGATCTACAACCCGACCGAGCAGGACATTtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagat                                                                                                                                                                  >  1:6757‑M1/1‑37 (MQ=255)
                                                  gATCTACAACCCGACCGAGCAGGACATTtggatttgcccctatatttccagacatctgttatcacttaaccccttacaagcccgctgccgcagatattcccgcggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctccgcaaggttctttgctgccgttaacccgtctggtttgggcatgatactgatgtagtcacgctttatcgttttcacgaagctctctgct       >  1:162245‑M1/1‑28 (MQ=255)
                                                      gattcagggagccagtctaaaaTTATCGATCTGAAATTCGCGATTGCGGATTCTGGTCTGTCTGTTAGTGAGCTGGTATCGGTGGCCTGGGCATCTGCTTCTACCTTCCGTGGTGGCGACAAACGCGGTGGTGCCAACGGTGCGCGTCTGGCATTAATGCCGCAGCGCGACTGGGATGTGAACGCCGCAGCCGTTCGTGCTCTGCCTGTTCTGGAGAAAATCCAGAAAGAGTCTGGTAAAGCCTCGCTGGc  >  1:37173/22‑251 (MQ=255)
                                                                ccgaGCAGGACATTtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgcaaggttctttgctgccgttaacccgtctggtttgggcatgatactgat                                            >  1:24846‑M1/1‑14 (MQ=255)
                                                                             |                                                                                                                                                                                                                                   
CCGGAAGTGCCGAAAGAAGATCTGATCTGGCAAGATCCGCTGCCGCAGCCGATCTACAACCCGACCGAGCAGGACATTATCGATCTGAAATTCGCGATTGCGGATTCTGGTCTGTCTGTTAGTGAGCTGGTATCGGTGGCCTGGGCATCTGCTTCTACCTTCCGTGGTGGCGACAAACGCGGTGGTGCCAACGGTGCGCGTCTGGCATTAATGCCGCAGCGCGACTGGGATGTGAACGCCGCAGCCGTTCGTGCTCTGCCTGTTCTGGAGAAAATCCAGAAAGAGTCTGGTAAAGCCTCGCTGGC  >  NC_000913/4135107‑4135411

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.