| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC JC | NC_000913 | 4,123,923 | IS2 (–) +5 bp | coding (530‑534/1026 nt) | cytR ← | DNA‑binding transcriptional repressor CytR |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4123923 = | 0 (0.000) | 3 (0.410) | 3/314 | 0.5 | 100% | coding (534/1026 nt) | cytR | DNA‑binding transcriptional repressor CytR |
| ? | NC_000913 | 4498181 = | NA (NA) | noncoding (1/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | = 4123927 | 0 (0.000) | 6 (0.810) | 5/314 | 0.2 | 100% | coding (530/1026 nt) | cytR | DNA‑binding transcriptional repressor CytR |
| ? | NC_000913 | = 4499511 | NA (NA) | noncoding (1331/1331 nt) | IS2 | repeat region | |||||
GGCGGTTGTGGAAGATCAAGCAGCTGCTGCATCGCTTTGCTTCCGGCTTCGAAGGTGAAGTCGCCACGGGCGATGTATTGCGGATCAACCATAATGCCGCAGCGACGCAGCGCCTGAACATAGCCTTGCAGGCGGTAGTGACACAGCGGCATCTCTTCGGGACCGGCTATACAGCCAATCCGTTTATGCCCTTGCTCATATAAATAATTTACTGCATCAAATGCGGCGGTCAGATTGTCGATATGAACTGTAGGCAGCTCCAGCTCCGGTGCAAATTCGTTCGCCATCACCATCGGCGGCAGATTACGCTGTTCCTCAATGCTGGCATCAAACGGCAGCCTTGAACCCAGCAACAACATGCCATCAATTT > NC_000913/4123720‑4124089 | ggCGGTTGTGGAAGATCAAGCAGCTGCTGCATCGCTTTGCTTCCGGCTTCGAAGGTGAAGTCGCCACGGGCGATGTATTGCGGATCAACCATAATGCCGCAGCGACGCAGCGCCTGAACATAGCCTTGCAGGCGGTAGTGACACAGCGGCATCTCTTCGGGACCGGCTATACAGCCAATCCGTTTATGCCCTTGCTCATATAAATAATtggatttgcccctatatttccagacatctgttatcacttaacc < 1:174400‑M1/251‑44 (MQ=255) nctgcaTCGCTTTGCTTCCGGCTTCGAAGGTGAGGTCGCCACGGGCGGTATATTGCGGTTCAACCATAATGCCGCAGCGACGCAGCGCCTGAACATAGCCTTGCAGGCGGTAGGGGCACAGCAGCATCTACTCGGGACCGGCTATCCAGCCAATCCGTTTTTGCCCTTGCTCTTATAAATAATtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagat > 1:17799‑M1/2‑183 (MQ=255) gccgtctgcgttgctccggcccaaagacatcaatcatctgttcaccaatgactagtctaaaaactagtattaagactatcactgatttaagtgatattggttttcttgagattcagggggcctttctaATAATTTACTGCATCAAAGGCGGCGGGCAGATGGTCGAGAGGAACTGTAGGCAGCTTCAGCTCCGGTGCAAACTCGTTCGCCATCACCATCGGCGGGAGATTACGCTGTTCCTCAATGCTGGc > 1:118621‑M1/129‑251 (MQ=255) cgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagttatattggttgtctggcgattcagggggccagtctaATAATTTACTGCATCAAATGCGGCGGTAAGATTGTCGATATGAACTGTAGGCAGCTCCAGCTCCGGTGCAAATTCGTTCGCCATTACCATCGGCGGCCGATTACGCTGTTACTCCATGCTGGCAt < 1:7600‑M1/125‑1 (MQ=255) ctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaATAATTTACTGCATCAAATGCGGCGGTCAGATTGTCg < 1:94852‑M1/37‑1 (MQ=255) tgACCGGCTATACAGCCAATCCGTTTATGCCCCTGCTCCTataaatatt > 1:84589/2‑47 (MQ=255) ggACCGGCTATACAGCCAATCCGTTTATGCCCTTGCTCATATAAATAATtggaattgcccctatatgtccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataaggctcgaacgcctctgcaaggttctttgctgcc < 1:176604‑M1/202‑154 (MQ=255) tataCNNCCNNNCCNNTTATGCCCTTGCTTATATAAATANTtggatttgcccctatatttccagacatcngntntcacnnaacncattacgagcncgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcngntgccattcgttataatgctcgaacgcctctgncaggttctttgctgccgttaacccn > 2:127813‑M1/1‑41 (MQ=255) tataCAGCCAATCCGTTTATGCCCTTGCTTATATAAATAATtggatttgcccctatatttccagacatctgttatcacttaacccattacgagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgcgcgaacgcctctgcaaggttctttgctgccgttaacccg < 1:127813‑M1/203‑163 (MQ=255) cAATCCGTTTATGCCCTTGCTCATATAAATAATtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccnntgccgc > 2:4928‑M1/1‑33 (MQ=255) | GGCGGTTGTGGAAGATCAAGCAGCTGCTGCATCGCTTTGCTTCCGGCTTCGAAGGTGAAGTCGCCACGGGCGATGTATTGCGGATCAACCATAATGCCGCAGCGACGCAGCGCCTGAACATAGCCTTGCAGGCGGTAGTGACACAGCGGCATCTCTTCGGGACCGGCTATACAGCCAATCCGTTTATGCCCTTGCTCATATAAATAATTTACTGCATCAAATGCGGCGGTCAGATTGTCGATATGAACTGTAGGCAGCTCCAGCTCCGGTGCAAATTCGTTCGCCATCACCATCGGCGGCAGATTACGCTGTTCCTCAATGCTGGCATCAAACGGCAGCCTTGAACCCAGCAACAACATGCCATCAATTT > NC_000913/4123720‑4124089 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |