| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC JC | NC_000913 | 2,269,876 | IS5 (+) +4 bp | intergenic (+309/‑100) | lpxT → / → mepS | lipid A‑core phosphotransferase/peptidoglycan endopeptidase/peptidoglycan L,D‑carboxypeptidase |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 2269876 = | 0 (0.000) | 8 (1.080) | 6/314 | 0.2 | 100% | intergenic (+309/‑103) | lpxT/mepS | lipid A‑core phosphotransferase/peptidoglycan endopeptidase/peptidoglycan L,D‑carboxypeptidase |
| ? | NC_000913 | 2288919 = | NA (NA) | noncoding (1195/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | = 2269879 | 0 (0.000) | 9 (1.210) | 9/316 | 0.0 | 100% | intergenic (+312/‑100) | lpxT/mepS | lipid A‑core phosphotransferase/peptidoglycan endopeptidase/peptidoglycan L,D‑carboxypeptidase |
| ? | NC_000913 | = 2290113 | NA (NA) | noncoding (1/1195 nt) | IS5 | repeat region | |||||
GTAAATGAATGGATTGCATGCGTTTCACTCAATTGTACTTTAATTGACCAACCCCGCTTATTAACTTTCTGTATCACTTTTTCTTATAAAAAATCATGTAAAACCGCTCGCCAAGACCGCACCAATCGGGTAATCTCGAACTCGTTTTGCCTCGGCGGTAGATTATCCTCACAGCATATAATTTTGTGCGTTAGTCCACAGATTTGGCCTTAAGGAATTGTTTCAACATGCCCAGGTAATTAGTCTCGTGTCGCTTGGCATTTTTTTATAACGATATTTGTCGTTAAGGACTTCAAGGGAAAACAAACAACATGGTCAAATCTCAACCGATTTTGAGATATATCTTGCGCGGGATTCCCGCGATTGCAGTAGCGGTTCTGCTTTCTGCATGTAGTGCAAATAACACCGCAAAGAATATGCATCCTGAGACACGTGCAGTGGGTAGTGAAA > NC_000913/2269668‑2270117 | tcacgctggccaacctgtttcgggcggaccaaatgatacgtcagtgggagagatctcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaaggactgagtcagccgagaagaagttccccgcttattcgcaccttccCTTAAGGAATTGTTTCAACATGCCCAGGTAATTAGTCTCgtg > 1:130421‑M1/209‑250 (MQ=255) ggccaacctgtttcgggcggaccaaatgatacgtcagtgggagagatctcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTTAAGGAATTGTTTCAACATGCCCAGGTAATTAGTCTCGTGTCGCTTng > 1:135001‑M1/202‑251 (MQ=255) nctgtttcgggcggaccaaatgatacgtcagtgggagagatctcactaaaaactggggataacgccttacatggcgaagaaacggtataaataggctgattcacggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTTAAGGAATTGTTTCAACATGCCCAGGTAATTAGTCTCGTGTCGCTTGGCAtttt < 1:32083‑M1/56‑1 (MQ=255) gCATGCGTTTCACTCAATTGTACTTTAATTGACCAACCCCGCTTATTAACTTTCTGTATCACTTTTTCTTATAAAAAATCATGTAAAACCGCTCGCCAAGACCGCACCAATCGGGTAATCTCGAACTCGTTTTGCCTCGGCGGTAGATTATCCTCACAGCATATAATTTTGTGCGTTAGTCCACAGATTTGGCCTTAggaagatgcgaacaagtccctgatatgagatcctgtttgtcatctggagccat > 1:39868‑M1/1‑197 (MQ=255) aaTTGTACTTTAATTGACCAACCCCGCTTATTAACTTTCTGTATCACTTTTTCTTATAAAAAATCATGTAAAACCGCTCGCCAAGACCGCACCAATCGGGTAATCTCGAACTCGTGTTGCCTCGGCGGTAGATTATCCTCACAGCATATAATTGTGTGCGTTAGTCCACAGATTTGGCCTTAggaaggtgcgaacaagtccctgatatgagatcatgggtgtcatctggagccatagaacaggtttcatca < 1:53087‑M1/251‑70 (MQ=255) ccAACCCCGCTTATTAACTTTCTGTATCACTTTTTCTTATAAAAAATCATGTAAAACCGCTCGCCAAGACCGCACCAATCGGGTACTCTCAAACTCGTTTTGCCTCGGCGGTATATTATCCTCACAGCATATAATTTTGTGCGTTAGTCCACAAATTTGGCCTTAggaaggtgcgaacaagtccctgatatgtgaatatgtttgtcatctggagccatagaacaggggtcatcatgaatcatccacttacc > 1:56780‑M1/1‑165 (MQ=255) ggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgcctgagacagccgagaagaatttccccgcttattcgcaccttccCTTAAGGAATTGTTTCACCATGCCCAGGAAATTAGTCTCGTGTCGCTTGGCATTTTTTTATAACGATATTTGTCGTTAAGGACTTCAAGGGAAAACAAACAACATGGTCaa < 1:143588‑M1/111‑1 (MQ=255) gNNNNNCTTNTTCTTATAAAAAATCATGTAAAACCGCTCGCCAAGACCGCACCAAGCGGGTAATCTCGAACTCGTTTTGCCTCGGCGGTAGATTATCCTCACAGCATATAATTTTGTGCGTTAGTCCACAGATTTGGCCTTAg < 2:104968‑M1/143‑2 (MQ=255) ggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgacggagtcagccgagaagaatttcccctcttattcgcaccgtccCTTAAGTAATTGTTTCAACATGCCCAGGTAATTAGTCTCGTGTCGCTTGGCATTTTTTTATAACGATATTGGTCGTTAAGGACTTCAAGGGAAAACAAACAACATGGTCAAATCTCAACCGAtt > 1:90450‑M1/124‑247 (MQ=255) cggtctaaataggctgattcacggcatttacgggagaaacaatcggctcaaacatgacgcaatgaaatgactgagtcagccgcgaagcatttccccgcttattcgcaccttccCTTAAGGAATTGTTTCAACATGCCCAGGCAATTAGTCTCGTGTCGCTTGGCATTTTTTTATAACGATATTTGTCGTTAAGGACTTCCAGGGAAAACAACCAACATGGTCAAATCTCAACCGATTTTGAGATATATCtt < 1:72677‑M1/138‑1 (MQ=255) ntctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTTAAGGAATTGTTTCAACATGCCCAGGTAATTAGTCTCGTGTCGCTTGGCATTTTTTTATAACGATATTTGTCGTTAAGGACTTCAAGGGAAAACAAACAACATGGTCAAATCTCAACCGATTTTGAGATATATCTTgc < 1:103006‑M1/140‑1 (MQ=255) ccTCGGCGGTAGATTATCCTCACAGCATATAATTTTGTGCGTTAGTCCACAGATTTGGCCTTAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagagtttcttgtcccgcatggagcagattctgccatggcaaaacatggtggaagtc < 1:132129‑M1/251‑189 (MQ=255) aagCATATAATTTTGTGCGTTAGTCAACAGATTTGGTCGTAggaaggtgcgaacaagtccctgagatgagatcaggtttgtcatctggagcaatagaacagggttcagcatgagtcagcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtcccgcatggagcagatgctgccatggcaaaacatggtggaagtcatcgagccgttttaccccaagg < 1:14155‑M1/250‑211 (MQ=255) ccccgcttattcgcaccttccCTTAAGGAATTGTTTCAACATGCCCAGGTAATTAGTCTCGTGTCGCTTGGCATTTTTTTATAACGATATTTGTCGTTAAGGACTTCAAGGGAAAACAAACAACATGGTCAAATCTCAACCGATTTTGAGATATATCTTGCGCGGGATTCCCGCGATTGCAGTAGCGGTTCTGCTTTCTGCATGTAGTGCAAATAACACCGCAAAGAATATGCATCCTGAGACACGTGc < 1:56515‑M1/228‑1 (MQ=255) gTTAGTCCACAGATTTGGCCTTAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagatttgcttgtcccgcatggagcagattctgccatggcaaaacatggtggaagtcatcgag < 1:140515‑M1/217‑195 (MQ=255) aGATTTGGCCTTAggaaggtgcgaacaagtccctgatatgagatcatttttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtcccgcatggagcagattctgccatggcaaaacatggtggaagtcatcgagccgttttaccccaaggctggtaatggccggcgaccttatccgct < 1:149938‑M1/251‑239 (MQ=255) ccTTAggaaggtgcgaacaagtccctgatatgagatcatatttgtcatctggagccatagaacagggttcatcatgagtcatcaacgtaccttcgccgacagtgaatgcagcagtaagcgccgtcagaccataaaagagattttcttgtcccgcatggagcaaattctgccatggcaaaacatggtgg < 1:169289‑M1/188‑184 (MQ=255) | GTAAATGAATGGATTGCATGCGTTTCACTCAATTGTACTTTAATTGACCAACCCCGCTTATTAACTTTCTGTATCACTTTTTCTTATAAAAAATCATGTAAAACCGCTCGCCAAGACCGCACCAATCGGGTAATCTCGAACTCGTTTTGCCTCGGCGGTAGATTATCCTCACAGCATATAATTTTGTGCGTTAGTCCACAGATTTGGCCTTAAGGAATTGTTTCAACATGCCCAGGTAATTAGTCTCGTGTCGCTTGGCATTTTTTTATAACGATATTTGTCGTTAAGGACTTCAAGGGAAAACAAACAACATGGTCAAATCTCAACCGATTTTGAGATATATCTTGCGCGGGATTCCCGCGATTGCAGTAGCGGTTCTGCTTTCTGCATGTAGTGCAAATAACACCGCAAAGAATATGCATCCTGAGACACGTGCAGTGGGTAGTGAAA > NC_000913/2269668‑2270117 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |