New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	57276 =	0 (0.000)	6 (0.810)	6/316	0.2	100%	intergenic (‑167/‑88)	lptD/djlA	lipopolysaccharide assembly protein LptD/co‑chaperone protein DjlA
	?	NC_000913	= 382590	NA (NA)					noncoding (1331/1331 nt)	IS2	repeat region

TAACGTACTCGTCATCTCTACGCTAGTGTTAATCCTGTCCGAATAGCGTCAGTGGTGTTAGGCACGGCATTGAATGACAGGTATGATAATGCAAATTATAGGCGATGTCCCACAATTGACCGCAGCCGGAAAACGGTAAAAGCACCTTTATATTGTGGGAGATAGCCCTGATATCCGTGTGTCGATTTGGGGAATATATGCAGTATTGGGGAAAAATCATTGGCGTGGCCGTGGCCTTACTGATGGGCGGCGGCTTTTGGGGCGTAGTGTTAGGCCTGTTAATTGGCCATATGTTTGATAAAGCCCGTAGCCGTAAAATGGCGTGGTTCGCCAACCAGCGTGAGCGTC  >  NC_000913/57167‑57514                                                                                                              |                                                                                                                                                                                                                                               ggcatccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaCCACAATTGACCGCAGCCGGAAAACGGTAAAAGCACCTTTATATTGTGGGAGATAGCCCTGATATCCGTGTGTCGATTTGGGGAATATATGCAGTATTGGGGAAAAATCATTGGCGTGGCCGTGGCCTTACTGATGggcgg                                                                                                    >  1:66933‑M1/110‑250 (MQ=255) ggcatccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaagataggggcaaatccaCCACAATTGACCGCAGCCGGAAAACGGTAAAAGCACCTTTATATTGGGGGAGATAGCCCTGATATCCGTGTTTCGATTTGGGGAATATATGCAGTATTGGGGAAAAATCATTGGCGTGGTCGTGGCCTTACTGATGggcggc                                                                                                   >  1:67173‑M1/110‑251 (MQ=255)        gcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatggattaagtgataacagatgtctggaaatataggggcaactccaCCACAAtt                                                                                                                                                                                                                                         <  1:160597‑M1/8‑1 (MQ=255)                             ctctccacgggaatatcggcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatatagggtcaaatccaCCACAATTTACCGCAGCCGGAAAACGGTAAAAGCACCTTGATATTGTGGGAGATATCCCTGATATCCGTGTGGCGATTTGGGGAATATATGCAGTATTGGGGAAAAATCATTGGCGTGGCCGTGGCCTTAc                                                                                                              >  1:123378‑M1/82‑212 (MQ=255)                                                                atgggttaagtgataacagatgtctggaaatataggggcaaatccaCCACAATTGACCGCAGCTGGAAAACGGTAAAAGCACATTTATATTGTGAGAGATAGCCCGGATATCCGTGTGTCGATTTGGGGAATATATGCAGTATTGGGGAAAGATCATTGGCGTGGCCGTGGCCTTACTGATGGGCGGAGGCTTTTGGGGCGTAGTGTTAGGCCTGTTAATTGGCCATATGTTTGATAAAGCCCGTAGCCGt                                    <  1:63131‑M1/205‑1 (MQ=255)                                                                                                  ggggcaaatccaCCACAATTGACCGCAGCCGGAAAACGGTAAAAGCACCTTTATATTGTGGGAGATAGCCCTGATATCCGTGTGTCGATTTGGGGAATATAGACAGTATTGGGTAAAAATCATTGGTGTGGCCGTGGCCTTACTGATGGGCGGCGGCTTTTGGGGCGTAGTGTTAGGCCTGTTAATTGGCCATATGTTTGATAAAGCCCGTAGCCGTAAAATGGCGTGGTTCGCCAACCAGCGTGAGCGTc  >  1:168211‑M1/13‑251 (MQ=255)                                                                                                              |                                                                                                                                                                                                                                               TAACGTACTCGTCATCTCTACGCTAGTGTTAATCCTGTCCGAATAGCGTCAGTGGTGTTAGGCACGGCATTGAATGACAGGTATGATAATGCAAATTATAGGCGATGTCCCACAATTGACCGCAGCCGGAAAACGGTAAAAGCACCTTTATATTGTGGGAGATAGCCCTGATATCCGTGTGTCGATTTGGGGAATATATGCAGTATTGGGGAAAAATCATTGGCGTGGCCGTGGCCTTACTGATGGGCGGCGGCTTTTGGGGCGTAGTGTTAGGCCTGTTAATTGGCCATATGTTTGATAAAGCCCGTAGCCGTAAAATGGCGTGGTTCGCCAACCAGCGTGAGCGTC  >  NC_000913/57167‑57514

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.