| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 4,579,530 | C→T | G104E (GGA→GAA) | symE ← | nucleoid‑associated protein SymE |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,579,530 | 0 | C | T | 94.1% | 92.6 / ‑2.9 | 34 | G104E (GGA→GAA) | symE | nucleoid‑associated protein SymE |
| Reads supporting (aligned to +/- strand): ref base C (1/1); new base T (22/10); total (23/11) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
TTGTTGCTGTGCTTGCTTAATAAATTTTTCAATCCAGGGTTGAATAGATTCCATAAGATATGCCTTCCTCATTGCTAAGCCTCTATTATCGCTTTCGCAACGTACTGAAACAATAGATTTTTACTGCAAAATCAGACTGGTAAATATTTACTGAGGGGGAAAGTTTCTATTGAGTCAGTGGAAGGCTCCCGGTGGTTAACCGGGAGTAAACGCTGTTACGCGACTTTCTGTTTACCGGCAATCACTCCAATAAACGCCT‑GCACCTGCTTTTGTTT‑ACGCGCCGACAGTTTGCACACCTGGCGTAGCGACTGCATCAGTTCGCTCTCCTCGGCGGCGGGTGGTTGGGCGGTGAGGACAATACAGCCTTCCATCACTTTGACATCTACCGCCGTGCCAGTGGCAAAACCGGCGGCTTCCAGCCACTGACCTTTCAGGGTGATGGCGGGAATACGGCTGTAATCCGGGTAGCGACTCGCATAACCGACGGTG > NC_000913/4579284‑4579772 | ttgttgCTGTGCTTGCTTAATAAATTTTTCAATCCAGGGTTGAATAGATTCCATAAGATATGCCTTCCTCATTGCTAAGCCTCTATTATCGCTTTCGCAACGTACTGAAACAATAGATTTTTACTGCAAAATCAGACTGGTAAATATTTACTGAGGGGGAAAGTTTCTATTGTGTCAGTGGAAGGCTCCCGGTGGTTAACCGGGAGTAAACGATGTTACGCGACTTTCTGTTTACCGGCAATCACTTCAAt > 1:297846/1‑251 (MQ=255) tgtgCTTGCTTAATAAATTTTTCAATCCAGGGTTGAATAGATTCCATAAGATATGCCTTCCTCATTGCTAAGCCTCTATTATCGCTTTCGCAACGTACTGAAACAATAGATTTTTACTGCAAAATCAGACTGGTAAATATTTACTGAGGGGGAAAGTTTCTATTGAGTCAGTGGAAGGCTCCCGGTGGTTAACCGGGAGTAAACGCTGTTACGCGACTTTCTGTTTACCGGCAATCACTTAAATAAACGcc > 2:1317/1‑251 (MQ=255) tgcttAATAAATTTTTCAATCCAGGGTTGAATAGATTCCATAAGATATGCCTTCCTCATTGCTAAGCCTCTATTATCGCTTTCGCAACGTACTGAAACAATAGATTTTTACTGCAAAATCAGACTGGTAAATATTTACTGAGGGGGAAAGTTTCTATTGAGTCAGTGGAAGGCTCCCGGTGGTTAACCGGGAGTAAACGCTGTTACGCGACTTTCTGTTTACCGGCAATCACTTCAATAAACGCCT‑GCAc < 1:488663/250‑1 (MQ=255) tttttCATTCCAGGGTTGAATAGATTCCCTAAGATATACCTACCTCATTGATAAGCATCTATTATCGCATTCGAAACGAACTCAAACAATAGACTTTTCCTGCAAAATCAGACTGGTAAATATTTAATGAGGGGGAAAGTTTCTATTGAGTCAGTGGAAGGCTCCCGGTGGTTAAACGGGAGTAAACGCTGTTACGCGACTTTCTGTTTACCGGCAATCACTTCAATAAACGCCT‑GCACCTGATTTTGttt > 2:285522/1‑251 (MQ=255) ttGAATAGATTCAATACGATACCCCTTCCTCATTGCTAAGTCTCTCTTATCGATTTCCCAACGTACTGAAACAATACACTTTTACTGCAACATCAGACTGCTAAATATTTACTGAGGGGGCAAGTTTCTATTGAGTCAGTGGAAGGCTCCCGGCGGTTAACCGGGAGTAAACGCTGTTACGCGACTTTCTGTTTACCGGCAATCACTTCAATAAACGCCT‑GCACCTGCTTTTGTTT‑ACGCGCCGACAGttc > 2:616301/1‑250 (MQ=255) ttCCATAAGATATGCCTTCCTCATTGCTAAGCCTCTATTATCGCTTTCGCAACGTACTGAAACAATAGATTTTTACTGCAAAATCAGACTGGTAAATATTTACTGAGGGGGAAAGTTTCTATTGAGTCAGTGGAAGGCTCCCGGTGGTTAACCGGGAGTAAACGCTGTTACGCGACTTTCTGTTTACCGGCAATCACTTCAATAAACGCCT‑GCACCTGCTTTTGTTT‑ACGCGCCGACAGTTTGCACACCTg > 2:500652/1‑251 (MQ=255) aTAAGATATGCCTTCCTCATTGCTAAGCCTCTATTATCGCTTTCGCAACGTACTGAAACAATAGATTTTTACTGCAAAATCAGACTGGTAAATATTTACGGAGGGGGAAAGTTTCTATTGAGTCAGTGGAAGGCTCCCGGTGGTTAACCGGGAGTAAACGCTGTTACGCGACTTTCTGTTTACCGGCAATCACTTCAATAAACGCCG‑GCACCTGCTTTTGTTT‑ACGCGCCGACAGTTTGCACACCGGGCGt < 1:660861/251‑1 (MQ=255) atatGCCTTCCTCATTGCTAAGCCTCTATTATCGCTTTCGCAACGTACTGAAACAATAGATTTTTACTGCAAAATCAGACTGGTAAATATTTACTGAGGGGGAAAGTTTCTATTGAGTCAGTGGAAGGCTCCCGGTGGTTAACCGGGAGTAAACGCTGTTACGCGACTTTCTGTTTACCGGCAATCACTTCAATAAACGCCT‑GCACCTGCTTTTGTTT‑ACGCGCCGACAGTTTGCACACCTGGCGTAGCg > 1:136668/1‑250 (MQ=255) tttCGCAACGTACTGAAACAATAGATTTTTACTGCAAAATCAGACTGGTAAATATTTACTGAGGGGGAAAGTTTCTATTGAGTCAGTGGAAGGCTCCCGGTGGTTAACCGGGAGTAAACGCTGTTACGCGACTTTCTGTTTACCGGCAATCACTTCAATAAACGCCT‑GCACCTGCTTTTGTTT‑ACGCGCCGAAAGTTTGCAAACCTGGCGTAGCGACTGCATCAGTTCGCTCTCCTCGGCGGCGGGGGGtt > 2:470041/1‑251 (MQ=255) cGCAACGTACTGAAACAATAGATTTTTACTGCAAAATCAGACTGGTAAATATTTACTGAGGGGGAAAGTTTCTATTGAGTCAGTGGAAGGCTCCCGGTGGTTAACCGGGAGTAAACGCTGTTACGCGACTTTCTGTTTACCGGCAATCACTTCAATAAACGCCT‑GCACCTGCTTTTGTTT‑ACGCGCCGACAGTTTGCACACCTGGCGTAGCGACTGCATCAGTTCGCTCTCCTCGGCGGCGGGTGGTTggg > 1:233951/1‑251 (MQ=255) cAACGTACTGAAACAATAGATTTTTACTGCAAAATCAGACTGGTAAATATTTACTGAGGGGGAAAGTTTCTATTGAGTCAGTGGAAGGCTCCCGGTGGTTAACCGGGAGTAAACGCTGTTACGCGACTTTCTGTTTACCGGCAATCACTTCAATAAACGCCT‑GCACCTGCTTTTGTTT‑ACGCGCCGACAGTTTGCACACCTGGCGTAGCGACTGCATCAGTTCGCTCTCCTCGGCGGCGGGTGGTTGGGCg > 2:319283/1‑251 (MQ=255) aaCGTACTGACACAATAGCTTTTTACTGCAAAATCAGACTGGTAAATATTTACTGAGGGGGAAAGTTTCTATTGAGTCAGTGGAAGGCTCCCGGTGGTTAACCGGGAGTAAACGCTGTTACGCGACTTTCTGTTTACCGGCAATCACTTCAATAAACGCCT‑GCACCTGCTTTTGTTT‑ACGCGCCGACAGTTTGCACACCTGGCGTAGCGACTGCATCAGTTCGCTCTCCTCGGCGGAGGGTGGTTGGGCgg > 2:316060/1‑251 (MQ=255) gTACTGAAACAATAGATTTTTACTGCAAAATCAGACTGGTAAATATTTACTGAGGGCGAAAGTTTCTATTGAGTCAGTGGAAGGCTCCCGGTGGTTAACCGGGAGTAAACGCTGTTACGCGCCTTTCTGTTTACCGGCAATCACTTCAATAACCGCCT‑GAACCTGCTTTTGTTT‑ACGCGCCGACAGTTTGCACACCTGGCGTAGCGACTGCATCAGTTCGCTCTCCTAGGCGGCGGGTGGTTGGGCGGTg > 1:311806/1‑250 (MQ=255) gAAACAATAGATTTTTACTGCAAAATCAGACTGGTAAATATTTACTGAGGGGGAAAGTTTCTATTGAGTCAGTGGAAGGCTCCCGGTGGTTAACCGGGAGTAAACGCTGTTACGCGACTTTCTGTTTACCGGCAATCACTTCAATAAACGCCT‑GCACCTGCTTTTGTTT‑ACGCGCCGACAGTTTGCACACCTGGCGTAGCGACTGCATCAGTTCGCTCTCCTCGGCGGCGGGTGGTTGGGCGGCGAGGa < 2:561963/249‑1 (MQ=255) aaccaTAGATTTTTAATGCAAAATCAGACTGGTAAATATTTACTGAGGGGGAAAGTTTCTATTGAGTCAGTGGAAGGCTCCCGTTGGTTAACCGAGAGTAAACGCTGTTACGCGACTTTCTGTTTACCGGCAATCACTTCAATAAACGCCT‑GCACCTGCTTTTGTTT‑ACGCGCCGACACTTTGCACACCTGGCGTAGCGACTGCATCAGTTCGCTCTCCTCGGCGGCGGGTGGTTGGGCGGTGAGGAAAAt < 2:516083/247‑1 (MQ=255) tagattttACTGCAAAATCAGACTGGTAAATATTTACTGAGGGGGAACGTTTCTATTGAGTCAGTGGAAGGCTCCCGGTGGTTAACCGGGAGTAAACGCTGTTACGCGACTTTCTGTTTACCGGCAATCACTCCAATAAACGCCT‑GCACCTGCTTTTGTTT‑ACGCGCCGACAGTTTGCACACCTGGCGTAGCGACTGCATCAGTTCGCTCTCCTCGGCGGCGGGTGGTTGGGCGGTGAGGACAATACAGcc > 1:87428/5‑251 (MQ=255) aTTTTTACTGCAAAATCAGACTGGTAAATATTTACTGAGGGGGAAAGTTTCTATTGAGTCAGTGGAAGGCTCCCGGTGGTTAACCGGGAGTAAACGCTGTTACGCGACTTTCTGTTTACCGGCAATCACTTCAATAAACGCCT‑GCACCTGCTTTTGTTT‑ACGCGCCGACAGTTTGCACACCTGGCGTAGCGACTGCATCAGTTCGCTCTCCTCGGCGGCGGGTGGTTGGGCGGTGAGGACAATACAGCCtt < 2:233951/251‑1 (MQ=255) ttACTGCAAAATCAGACTGGTAAATATTTACTGAGGGGGAAAGTTTCTATTGAGTCAGTGGAAGGCTCCCGGTGGTTAACCGGGAGTAAACGCTGTTACGCGACTTTCTGTTTACCGGCAATCACTTCAATAAACGCCT‑GCACCTGCTTTTGTTT‑ACGCGCCGACAGTTTGCACACCTGGCGTAGCGACTGCATCAGTTCGCTCTCCTCGGCGGCGGGTGGTTGGGCGGTGAGGACAATACAGCCTTCCa < 1:71078/250‑1 (MQ=255) tatTTACTGAGGGGGAAAGTTTCTATTGAGTCAGTGGAAGGATCCCGGTGGTTAACCGGGAGTAAACGCTGTTACGCGACTTTCTGTTTACCGGAAATCACTTCAATAAACGCCT‑GCACCTGCTTTTGTTT‑ACGCGCCGAAAGTTTGCACACCTGGCGTAGCGACTGCATCAGTTCGCTCTCCTCGGCGGCGGGTGGTTGGGCGGGGAGGACAATACAGCCTTCCATCACTTTGACATCTACCGCCGTGcc > 2:480495/1‑251 (MQ=255) tACTGAGGGGGAAAGTTTCTATTGAGTCAGTGGAAGGCTCCCGGTGGTTAACCGGGAGTAAACGCTGTTACGCGACTTTCTGTTTACCGGCAATCACTTCAATAAACGCCT‑GCACCTGCTTTTGTTT‑ACGCGCCGACAGTTTGCACACCTGGCGTAGCGACTGCATCAGTTCGCTCTCCTCGGCGGCGGGTGGTTGGGCGGTGAGGACAATACAGCCTTCCATCACTTTGACATCTACCGCCGTGCCAGTg > 1:33528/1‑251 (MQ=255) ggggAAAGTTTCTATTGAGTCAGTGGAAGGCTCCCGGTGGTTAACCGGGAGTAAACGCTGTTACGCGACTTTCTGTTTACCGGCAATCACTTCAATAAACGCCT‑GCACCTGCTTTTGTTT‑ACGCGCCGACAGTTTGCACACCTGGCGTAGCGACTGCATCAGTTCGCTCTCCTCGGCGGCGGGTGGTTGGGAGGTGAGGACAATACAGCCTTCCATCACTTTGACATCTACCGCCGTGCCAGTGGCAAAAc > 2:498048/1‑251 (MQ=255) gTTTCTATTGAGTCAGTGGAAGGCTCCCGGTGGTTAACCGGGAGTAAACGCTGTTACGCGACTTTCTGTTTACCGGCAATCACTTCAATAAACGCCT‑GCACCTGCTTTTGTTT‑ACGCGCCGACAGTTTGCACACCTGGCGTAGCGACTGCATCAGTTCGCTCTCCTCGCCGGCGGGTGGTTGGGCGGTGAGGACAATCCAGCCTTCCATCACTTTGACATCTACCGCCGTGCCCATGGCAAAACCggcggc > 2:441074/1‑251 (MQ=255) tGAGTCAGAGGAAGGCTCCCGGTGGTTAACCGGGAGTACACCCTGTTACGCGACTTTCTGTTTACCGGCAATCACTTCAATAAACGCCT‑GCACCTGCTTTTGTTT‑ACGCGCCGACAGTTTGCACACCTGGCGTAGCGACTGCATCAGTTCGCTCTCCTCGGCGGCGGGTGGTTGGGCGGTGAGGACCATACAGCCTTCCATCACTTTGACATCTACTGCCGTGCCAGTGGCAAAACCGTCGGCTTCCAGcc > 2:623051/1‑251 (MQ=255) aGTGGACGGCGCCCGGGGGTAAACGGTGAGTAAGTGCGGTTACGCGACTTTCTGTTGCCCGCCAGTCACTCCAATAGACGCCTCGC‑CCTGCTTTTGTTT‑CCGCGCCGACATTTTGCACACCTGGCGTAGCGCCTGCAGCATTCCGCTCGCCTCGGCGGCGGGTGGTAGGGCGGGCAGGACAATACAGCCTCCCTTCACTTTGACATGTTCCGCCGTGCCATTGGCAAAACCGGCGGCTTCCAGCCACTGAc < 1:285522/251‑1 (MQ=255) aGTGGAAGGCTCCCGGTGGTTAACCGGGAGTAAACGCTGTTACGCGACTTTCTGTTTACCGGCAATCACTTCAATAAACGCCT‑GCACCTGCTTTTGTTT‑ACGCGCCGACAGTTTGCACACCTGGCGTAGCGACTGCATCAGTTCGCTCTCCTCGGCGGCGGGTGGTTGGGCGGTGAGGACAATACAGCCTTCCATCACTTTGACATCTAccgcc > 2:5902/1‑214 (MQ=255) aGTGGAAGGCTCCCGGTGGTTAACCGGGAGTAAACGCTGTTACGCGACTTTCTGTTTACCGGCAATCACTTCAATAAACGCCT‑GCACCTGCTTTTGTTT‑ACGCGCCGACAGTTTGCACACCTGGCGTAGCGACTGCATCAGTTCGCTCTCCTCGGCGGCGGGTGGTTGGGCGGTGAGGACAATACAGCCTTCCATCACTTTGACATCTAccgcc < 1:5902/214‑1 (MQ=255) cccGGTGGTTAACCGAGAGAAAACGCTGTTACGCGACTTTCTGTTTCCCGGCAATCACTTCAATAAACGCCT‑GCACCTGCTTTTGTTT‑ACGCGCCGACAGTTTGCACACATGGCGTAGCGACTGCATCAGTTCGCTCTCCTCGGCGGCGGGTGGTTGGGCGGTGAGGACAATACAGCCTTCCATCACTTTGCCATCTACCGCCGTGCCAGTGGCAAAACCGCCGCCTTCCAGCCCCTGCCCTTTCAGGGTg > 2:82061/1‑251 (MQ=255) aGTAAACGCTGTTACGCGACTTTCTGTTTACCGGCAATCACTTCAATAAACGCCT‑GCACCTGCTTTTGTTT‑ACGCGCCGACAGTTTGCACACCTGGCGTAGCGACTGCATCAGTTCGCTCTCCTCGGCGGCGGGTGGTTGGGCGGTGAGGACAATACAGCCTTCCATCACTTTGACATCTACCGCCGTGCCAGTGGCAAAACCGGCGGCTTCCAGCCACTGACCTTTCAGGGTGATGGCGGGAATACGGcc > 2:59018/1‑250 (MQ=255) aaCGCTGTTACGCGACTTTCTGTTTACCGGCAATCACTTCAATCAACGCCT‑GCACCTGCTTTTGTTT‑ACGCGCCGACAGTTTGCACACCTGGCGTAGCGACTGCATCAGTTCGCTCTCCTCGGCGGCGGGTGGTTGGGCGGTGAGGACAATACAGCCTTCAATCACTTTGACATCTACCGCCGTGCCAGTGGCAAAACCGGCGGCTTCCAGCCACTGACCTTTCAGGGTGATGGCGGGAATACGGCTGTa > 1:210396/1‑250 (MQ=255) cGCTGTTACGCGACTTTCTGTTTACCGGCAATCACTTCAATAAACGCCT‑GCACCTGCTTTTGTTT‑ACGCGCCGACAGTTTGCACACCTGGCGTAGCGACTGCATCAGTTCGCTCTCCTCGGCGGCGGGTGGTTGGGCGGTGAGGACAATACAGCCTTCCATCACTTTGACATCTACCGCCGTGCCAGTGGCAAAACCGGCGGCTTCCAGCCACTGACCTTTCAGGGTGATGGCGGGCATACGGCTGTAATc > 2:237985/1‑251 (MQ=255) gcgccTTTCTGTTTCCCGGCAATCACTTCAATAAACCCCT‑GCCCCTGCTTTTTTTT‑ACGCGCCGCAAGTTTGCCCACCGGGCGTGGCGACTGCATCAGTCCGCTCTCCTCGGCGGGGGGTGTTTGGGCGGGGAGGACAATACAGCTTTCCATCATTTGGACATCTCCCGCCGTGCCAGTGGCAAAACCGGCGGCTTCCAGCCACTGACCTTTCAGGGTGATGGCGGGAATACGGCTGTAATCCGGGTAGCg < 2:33528/247‑1 (MQ=255) tGTTTACCGGCAATCACTTCAATAAACGCCT‑GCACCTGCTTTTGTTT‑ACGCGCCGACAGTTTGCACACCTGGCGTAGCGACTGCATCAGTTCGCTCTCCTCGGCGGCGGGTGGTTGGGCGGTGAGGACAATACAGCCTTCCATCACTTTGACATCTACCGCCGTGCCAGTGGCAAAACCGGCGGCTTCCAGCCACTGACCTTTCAGGGTGATGGCGGGAATACGGCTGTAATTCGGGTAGCCACTCGCAt > 2:178483/1‑250 (MQ=255) cgggCAATAACTTCAATAACCGCCT‑CCACAT‑CCTTTGTTTGACGCGCCGACAGTGTGCCCGCCTGGCGTAGCGATTGCACCGGTTCGCTTTCCTCGGCGGGGGGTGGTTTGGCGGTGGGGACAAAACAGCTTTCATTCACTTTGCCAGCTTCCGCCGTGCGAGTGGCAAAACCGGCGGCTTCCAGCCACTGACCTTTCAGGGTGATGGCGGGAATACGGCTGGAATCCGGGTAGCGACTCGCATAACCGAc < 2:51373/249‑1 (MQ=255) cAATAACTTCAATAAACGCCT‑GCCCCTGCTTTTTTTT‑ACGCGCGGACAGTTTGCACCCCTGGCGTAGCGACTGCATCAGTTCGCTCTCCTCGGCGGCGGGTGGTTGGGCGGTGAGGACAATTCAGCCTTCCATCACTTTGACATCTACCGCCGTGCCAGTGGCAAAACCGGCGGCTTCCAGCCACTGACCTTTCAGGGTGATGGCGGGAATACGGCTGTAATCCGGGTAGCGACTCGCATAACCGACGGTg < 1:470041/251‑1 (MQ=255) | TTGTTGCTGTGCTTGCTTAATAAATTTTTCAATCCAGGGTTGAATAGATTCCATAAGATATGCCTTCCTCATTGCTAAGCCTCTATTATCGCTTTCGCAACGTACTGAAACAATAGATTTTTACTGCAAAATCAGACTGGTAAATATTTACTGAGGGGGAAAGTTTCTATTGAGTCAGTGGAAGGCTCCCGGTGGTTAACCGGGAGTAAACGCTGTTACGCGACTTTCTGTTTACCGGCAATCACTCCAATAAACGCCT‑GCACCTGCTTTTGTTT‑ACGCGCCGACAGTTTGCACACCTGGCGTAGCGACTGCATCAGTTCGCTCTCCTCGGCGGCGGGTGGTTGGGCGGTGAGGACAATACAGCCTTCCATCACTTTGACATCTACCGCCGTGCCAGTGGCAAAACCGGCGGCTTCCAGCCACTGACCTTTCAGGGTGATGGCGGGAATACGGCTGTAATCCGGGTAGCGACTCGCATAACCGACGGTG > NC_000913/4579284‑4579772 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |