| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 4,099,855 | C→T | G224D (GGC→GAC) | rhaT ← | rhamnose/lyxose:H(+) symporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,099,855 | 0 | C | T | 98.5% | 207.6 / NA | 66 | G224D (GGC→GAC) | rhaT | rhamnose/lyxose:H(+) symporter |
| Reads supporting (aligned to +/- strand): ref base C (0/0); major base T (37/28); minor base A (1/0); total (38/28) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.13e-01 | |||||||||||
GACGATACCGCCGCACAATACATAGAAACTCATATGCAGCATCCAACTGATGTAGTCATACTGCGCCGGAATGCGGGCGTGGCCCCAGGCATAGAAAAAGAATTGCAGATACCACATCAACCCGCCCAGTGTCGAGAGTAACACATTGTGAATGATCAGCGATTTTGCCAGCGAGAAGTCGGCTTTTAGCGACAAATCCTTCACTTTTGCCAGACGAATAAAACAGAAACCGAGGTTAATGATCGCGCCGCCGCCCATGATGACAACATAGCTTGGCAGAGCGACATACAGTGGATCGACGCCAAGTGCGGCAGCGGCTTCATGCATCGGTTTTGCGGCGTTCATCGCAAAGGACATCCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCATCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCA > NC_000913/4099608‑4100098 | gacgaTACCGCCGCACAATACATAGAAACTCATATGCAGCATCCAACTGATGTAGTCATACTGCGCCGGAATGCGGGCGTGGCCCCAGGCATAGAAAAAGAATTGCAGATACCACATCAACCCGCCCAGCGTCGAGAGTAACACATTGTGAATGATCAGCGATTTTGCCAGCGAGAAGTCGGCTTTTAGCGACAAATCCTTCACTTTTGCCAGACGAATAAAACAGAAACCGAGGTTAATAATCGcgtcgc > 2:511551/1‑251 (MQ=255) aTACCGCCGCACAATACATAGAAACTCATATGCAGCATCCAACTGATGTAGTCATACTGCGCCGGAATGCGGGCGTGGCCCCAGGCATAGAAAAAGAATTGCAGATACCACATCAACCCGCCCAGTGTCGAGAGTAACACATTGTGAATGATCAGCGATTTTGCCAGCGAGAAGTCGGCTTTTAGCGACAAATCCTTCACTTTTGCCAGACGAATAAAACAGAAACCGAGGTTAATGATCGCgtcgccgcc > 1:568587/1‑251 (MQ=255) aTACCGCCGCACAATACATAGAAACTCATATGCAGCATCCAACTGATGTAGTCATACTGCGCCGGAATGCGGGCGTGGCCCCAGGCATAGAAAAAGAATTGCAGATACCACATCAACCCGCCCAGTGTCGAGAGTAACACATTGTGAATGATCAGCGATTTTGCCAGCGAGAAGTCGGCTTTTAGCGACAAATCCTTCACTTTTGCCAGACGAATAAAACAGAAACCGAGGTTAATGATCGCgtcgccgcc < 1:161409/251‑1 (MQ=255) aTACCGCCGAACAATACATAGAAACTCATATGCAGCATCCAACTGATGTAGTCATACTGCGCCGGAATGCGGGCGTGGCCCCAGGCATAGAAAAAGAATTGCAGATACCACATCAACCCGCCCAGTGTCGAGAGTAACACATTGTGAATGATCAGCGATTTTGCCAGCGAGAAGTCGGCTTTTAGCGACAAATCCTTCACTTTTGCCAGACGAATAAAACAGAAACCGAGGTTAATGATCGCgtcgccgcc > 2:144118/1‑251 (MQ=255) cgcACAATACATAGAAACTCATATGCAGCATCCAACTGATGTAGTCATACTGCGCCGGAATTCGGGCGTGGCCCCAGGCATAGAAAAAGAATTGCAGATACCACATCAACCCGCCCAGTGTCGAGAGTAACACATTGTGAATGATCAGCGATTTTGCCAGCGAGAAGTCGGCTTTTAGCGACAAATCCTTCACTTTTGCCAGACGAATACAACAGAAACCGAGGTTAATGATCGcgtcgcc > 2:148171/1‑241 (MQ=255) cgcACAATACATAGAAACGCATATGCAGCATCCAACTGATGTAGTCATACTGCGCCGGAATGCGGGCGTGGCCCCAGGCATAGAAAAAGAATTGCAGATACCACATCAACCCGCCCAGTGTCGAGAGTAACACATTGTGAATGATCAGCGATTTTGCCAGCGAGAAGTCGGCTTTTAGCGACAAATCCTTCACTTTTGCCAGACGAATAAAACATAAACCGATGGTAATGATCGcgtcgcc < 1:148171/241‑1 (MQ=255) aaTACATAGAAACTCATATGCAGCATCCAACTGATGTAGTCATACTGCGCCGGAATGCGGGCGTGGCCCCAGGCATAGAAAAAGAATTGCAGATACCACATCAACCCGCCCAGTGTCGAGAGTAACACATTGTGAATGATCAGCGATTTTGCCAGCGAGAAGTCGGCTTTTAGCGACAAATCCTTCACTTTTGCCAGACGAATAAAACAGAAACCGAGGTTAATGATCGCGTCGCCGCCCATGATGacaac > 1:427128/1‑251 (MQ=255) aTACATAGAAACTCATATGCAGCATCCAACTGATGTAGTCATACTGCGCCGGAATGCGGGCGTGGCCCCAGGCATAGAAAAAGAATTGCAGATACCACATCAACCCGCCCAGTGTCGAGAGTAACACATTGTGAATGATCAGCGATTTTGCCAGCGAGAAGTCGGCTTTTAGCGACAAATCCTTCACTTTTGCCAGACGAATAAAACAGAAACCGAGGTTAATGATCGCGTCGCCGCCCATGATGacaaca < 1:307504/251‑1 (MQ=255) aTAGAAACTCATATGCAGCATCCAACTGATGTAGTCATACTGCGCCGGAATGCGGGCGTGGCCCCAGGCATAGAAAAAGAATTGCAGATACCACATCAACCCGCCCAGTGTCGAGAGTAACACATTGTGAATGATCAGCGATTTTGCCAGCGAGAAGTCGGCTTTTAGCGACAAATCCTTCACTTTTGCCAGACGAATAAAACAGAAACCGAGGTTAATGATCGCGTCGCCGCCCATGATGACAACATAGc < 2:164062/251‑1 (MQ=255) aaCTCATATGCAGCATCCAACTGATGTAGTCATACTGCGCCGGAATGCGGGCGTGGCCCCAGGCATAGAAAAAGAATTGCAGATACCACATCAACCCGCCCAGTGTCGAGAGTAACACATTGTGAATGATCAGCGATTTTGCCAGCGAGAAGTCGGCTTTTAGCGACAAATCCTTCACTTTTGCCAGACGAATAAAACAGAAACCGAGGTTAATGATCGCGTCGCCGCCCATGATGACAACATAGCTTGGc < 1:532621/251‑1 (MQ=255) cTCATATGCAGCATCCAACTGATGTAGTCATACTGCGCCGGAATGCGGGCGTGGCCCCAGGCATAGAAAAAGAATTGCAGATACCACATCAACCCGCCCAGTGTCGAGAGTAACACATTGTGAATGATCAGCGATTTTGCCAGCGAGAAGTCGGCTTTTAGCGACAAATCCTTCACTTTTGCCAGACGAATAAAACAGAAACCGAGGTTAATGATCGCGTCGCCGCCCATGATGACAACATAGCTTGGc > 2:479696/1‑249 (MQ=255) atGCAGCATCCAACTGATGTAGTCATACTGCGCCGGAATGCGGGCGTGGCCCCAGGCATAGAAAAAGAATTGCAGATACCACATCAACCCGCCCAGTGTCGAGAGTAACACATTGTGAATGATCAGCGATTTTGCCAGCGAGAAGTCGGCTTTTAGCGACAAATCCTTCACTTTTGCCAGACGAATAAAACAGAAACCGAGGTTAATGATCGCGTCGCCGCCCATGATGACAACATAGCTTGGCAGAGCg < 1:420610/250‑1 (MQ=255) gcagcaTCCAACTGATGTAGTCATACTGCGCCGGAATGCGGGCGTGGCCCCAGGCATAGAAAAAGAATTGCAGATACCACATCAACCCGCCCAGTGTCGAGAGTAACACATTGTGAATGATCAGCGATTTTGCCAGCGAGAAGTCGGCTTTTAGCGACAAATCCTTCACTTTTGCCAGACGAATAAAACAGAAACCGAGGTTAATGATCGCGTCGCCGCCCATGATGACAACATAGCTTGGCAGAGCGAc > 1:439971/1‑250 (MQ=255) cagcaTCCAACTGATGTAGTCATACTGCGCCGGAATGCGGGCGTGGCCCCAGGCATAGAAAAAGAATTGCAGATACCACATCAACCCGCCCAGTGTCGAGAGTAACACATTGTGAATGATCAGCGATTTTGCCAGCGAGAAGTCGGCTTTTAGCGACAAATCCTTCACTTTTGCCAGACGAATAAAACAGAAACCGAGGTTAATGATCGCGTCGCCGCCCATGATGACAACATAGCTTGGCAGAGCGACAt > 1:379917/1‑251 (MQ=255) aCTGATGTAGTCATACTGCGCCGGAATGCGGGCGTGGCCCCAGGCATAGAAAAAGAATTGCAGATACCACATCAACCCGCCCAGTGTCGAGAGTAACACATTGTGAATGATCAGCGATTTTGCCAGCGAGAAGTCGGCTTTTAGCGACAAATCCTTCACTTTTGCCAGACGAATAAAACAGAAACCGAGGTTAATGATCGCGTCGCCGCCCATGATGACAACATAGCTTGGCAGAGCGACATACAGTGGAt > 1:540424/1‑251 (MQ=255) tGATGTAGTCATACTGCGCCGGAATGCGGGCGTGGCCCCAGGAATAGAAAAAGAATTGCAGATACCACATCAACCCGCCCAGTGTCGAGAGTAACACATTGTGAATGATCAGCGATTTTGCCAGCGAGAAGTCGGCTTTTAGCGACAAATCCTTCACTTTTGCCAGACGAATAAAACAGAAACCGAGGTTAATGATCGCGTCGCCGCCCATGATGACAACATAGCTTGGCAGAGCGACATACAGTGGATCg > 2:74579/1‑251 (MQ=255) aTGTAGTCATACTGCGCCGGAATGCGGGCGTGGCCCCAGGCATAGAAAAAGAATTGCAGATACCACATCAACCCGCCCAGTGTCGAGAGTAACACATTGTGAATGATCAGCGATTTTGCCAGCGAGAAGTCGGCTTTTAGCGACAAATCCTTCACTTTTGCCAGACGAATAAAACAGAAACCGAGGTTAATGATCGCGTCGCCGCCCATGATGACAACATAGCTTGGCAGAGCGACATACAGTGGATCGAc > 1:18628/1‑251 (MQ=255) cATACTGCGCCGGAATGCGGGCGTGGCCCCAGGCATAGAAAAAGAATTGCAGATACCACATCAACCAGCCCAGTGTCGAGAGTAACACATTGTGAATGATCAGCGATTTTGCCAGCGAGAAGTCGGCTTTTAGCGACAAATCCTTCACTTTTGCCAGACGAATAAAACAGAAACCGAGGTTAATGATCGCGTCGCCGCCCATGATGACAACATAGCTTGGCAGAGCGACATACAGTGGATCGACGCCAAg < 1:467133/250‑1 (MQ=255) cTGCGCCGGAATGCGGGCGTGGCCCCAGGCATAGAAAAAGAATTGCAGATACCACATCAACCCGCCCAGTGTCGAGAGTAACACATTGTGAATGATCAGCGATTTTGCCAGCGAGAAGTCGGCTTTTAGCGACAAATCCTTCACTTTTGCCAGACGAATAAAACAGAAACCGAGGTTAATGATCGCGTCGCCGCCCATGATGACAACATAGCTTGGCAGAGCGACATACAGTGGATCGACGCCAAGTGCgg > 2:611219/1‑251 (MQ=255) tGCGCCGGAATGCGGGCGTGGCCCCAGGCATAGAAAAAGAATTGCAGATACCACATCAACCCGCCCAGTGTCGAGAGTAACACATTGTGAATGATCAGCGATTTTGCCAGCGAGAAGTCGGCTTTTAGCGACAAATCCTTCACTTTTGCCAGACGAATAAAACAGAAACCGAGGTTAATGATCGCGTCGCCGCCCATGATGACAACATAGCTTGGCAGAGCGACATACAGTGGATCGACGCCAAGTGCGGc > 1:283069/1‑251 (MQ=255) ggAATGCGGGCGTGGCCCCAGGCATAGAAAAAGAATTGCAGATACCACATCAACCCGCCCAGTGTCGAGAGTAACACATTGTGAATGATCAGCGATTTTGCCAGCGAGAAGTCGGCTTTTAGCGACAAATCCTTCACTTTTGCCAGACGAATAAAACAGAAACCGAGGTTAATGATCGCGTCGCCGCCCATGATGACAACATAGCTTGGCAGAGCGACATACAGTGGATCGACGCCAAGTGCGGCAGCGGc > 1:442422/1‑251 (MQ=255) gCGGGCGTGTCCCCAGGCATAGAAAAAGAATTGCAGATACCACATCAACCCGCCCAGTGTCGAGAGTAACACATTGTGAATGATCAGCGATTTTGCCAGCGAGAAGTCGGCTTTTAGCGACAAATCCTTCACTTTTGCCAGACGAATAAAACAGAAACCGAGGTTAATGATCGCGTCGCCGCCCATGATGACAACATAGCTTGGCAGAGCGGCATTCAGTGGATCGAGGCCAAGGGCGGCAGCGGCTTCa < 2:71436/250‑1 (MQ=255) ggCGTGGCCCCAGGCATAGAAAAAGAATTGCAGATACCACATCAACCCGCCCAGTGTCGAGAGTAACACATTGTGAATGATCAGCGATTTTGCCAGCGAGAAGTCGGCTTTTAGCGACAAATCCTTCACTTTTGCCAGACGAATAAAACAGAAACCGAGGTTAATGATCGCGTCGCCGCCCATGATGACAACATAGCTTGGCAGAGCGACATACAGTGGATCGACGCCAAGTGCGGCAGCGGCTTCATGCa < 2:84462/251‑1 (MQ=255) cGTGGCCCCAGGCATAGAAAAAGAATTGCAGATACCACATCAACCCGCCCAGTGTCGAGAGTAACACATTGTGAATGATCAGCGATTTTGCCAGCGAGAAGTCGGCTTTTAGCGACAAATCCTTCACTTTTGCCAGACGAATAAAACAGAAACCGAGGTTAATGATCGCGTCGCCGCCCATGATGACAACATAGCTTGGCAGAGCGACATACAGTGGATCGACGCCAAGTGCGGCAGCGGCTTCATGCATc < 2:568587/251‑1 (MQ=255) aaaaGAATTGCAGATACCACATCAACCCGCCCAGTGTCGAGAGTAACACATTGTGAATGATCAGCGATTTTGCCAGCGAGAAGTCGGCTTTTAGCGACAAATCCTTCACTTTTGCCAGACGAATAAAACAGAAACCGAGGTTAATGATCGCGTCGCCGCCCATGATGACAACATAGCTTGGCAGAGCGACATACAGTGGATCGACGCCAAGTGCGGCAGCGGCTTCATGCATCGGTTTTGCGGCGTTCATc > 1:613190/1‑251 (MQ=255) aGAATTGCAGATACCACATCAACCCGCCCAGTGTCGAGAGTAAAACATTGTGAATGATCAGCGATTTTGCCAGCGAGAAGTCGGCTTTTAGCGACAAATCCTTCACTTTTGCCAGACGAATAAAACAGAAACCGAGGTTAATGATCGCGTCGCCGCCCATGATGACAACATAGCTTGGCAGAGCGACATACAGTGGAGCGACGCCAAGTGCGGCAGCGGCTTCCTGCATCGGTTTTGCGGCGTTCATCGc > 1:5657/1‑250 (MQ=255) aaTTGCAGATACCACATCAACCCGCCCAGTGTCGAGAGTAACACATTGTGAATGATCAGCGATTTTGCCAGCGAGAAGTCGGCTTTTAGCGACAAATCCTTCACTTTTGCCAGACGAATAAAACAGAAACCGAGGTTAATGATCGCGTCGCCGCCCATGATGACAACATAGCTTGGCAGAGCGACATACAGTGGATCGACGCCAAGTGCGGCAGCGGCTTCATGCATCGGTTTTGCGGCGTTCATCGCaa > 1:184274/1‑250 (MQ=255) aTTGCAGATACCACATCAACCCGCCCAGTGTCGAGAGTAACACATTGTGAATGATCAGCGATTTTGCCAGCGAGAAGTCGGCTTTTAGCGACAAATCCTTCACTTTTGCCAGACGAATAAAACAGAAACCGAGGTTAATGATCGCGTCGCCGCCCATGATGACAACATAGCTTGGCAGAGCGACATACAGTGGATCGACGCCAAGTGCGGCAGCGGCTTCATGCATCGGTTTTGCGGCGTTCATCGCAAAg < 1:229124/251‑1 (MQ=255) gCAGATACCACATCAACCCGCCCAGTGTCGAGAGTAACACATTGTGAATGATCAGCGATTTTGCCAGCGAGAAGTCGGCTTTTAGCGACAAATCCTTCACTTTTGCCAGACTAATAAAACAGAAACCGAGGTTAATGAGCGCGTCGCCGCCCATGATGACAACATAGCTTGGCAGAGCGACATCCAGTGGATCGAAGCCAAGGGCAGTAGCGGCTTCATGCATCGGTTTGGCGTCGTTCATCGCAAAGGa < 2:392762/250‑1 (MQ=255) aCCACATCAACCCGCCCAGTGTCGAGAGTAACACATTGTGAATGATCAGCGATTTTGCCAGCGAGAAGTCGGCTTTTAGCGACAAATCCTTCACTTTTGCCAGACGAATAAAACAGAAACCGAGGTTAATGATCGCGTCGCCGCCCATGATGACAACATAGCTTGGCAGAGCGACATACAGTGGATCGACGCCAAGTGCGGCAGCGGCTTCATGCATCGGTTTTGCGGCGTTCATCGCAAAGGACATCCCg < 2:18628/251‑1 (MQ=255) cacaTCAACCCGCCCAGTGTCGAGAGTAACACATTGTGAATGATCAGCGATTTTGCCAGCGAGAAGTCGGCTTTTAGCGACAAATCCTTCACTTTTGCCAGACGAATAAAACAGAAACCGAGGTTAATGATCGCGTCGCCGCCCATGATGACAACATAGCTTGGCAGAGCGACATACAGTGGATCGACGCCAAGTGCGGCAGCGGCTTCATGCATCGGTTTTGCGGCGTTCATCGCAAAGGACATCCCGGc > 1:155016/1‑251 (MQ=255) aaCCCGCCCAGTGTCGAGAGTAACACATTGTGAATGATCAGCGATTTTGCCAGCGAGAAGTCGGCTTTTAGCGACAAATCCTTCACTTTTGCCAGACGAATAAAACAGAAACCGAGGTTAATGATCGCGTCGCCGCCCATGATGTCAACATAGCTTGGCAGAGCGACATACAGTGGATCGACGCCAAGTGCGGCAGCGGCTTCATGCATCGGTTTTGCGGCGTTCATCGCAAAGGACATCCCGGCAgaga > 2:23840/1‑250 (MQ=255) aaCCCGCCCAGTGTCGAGAGTAACACATTGTGAATGATCAGCGATTTTGCCAGCGAGAAGTCGGCTTTTAGCGACAAATCCTTCACTTTTGCCAGACGAATAAAACAGAAACCGAGGTTAATGATCGCGTCGCCGCCCATGATGACAACATAGCTTgg > 1:346412/1‑158 (MQ=255) aaCCCGCCCAGTGTCGAGAGTAACACATTGTGAATGATCAGCGATTTTGCCAGCGAGAAGTCGGCTTTTAGCGACAAATCCTTCACTTTTGCCAGACGAATAAAACAGAAACCGAGGTTAATGATCGCGTCGCCGCCCATGATGACAACATAGCTTgg < 2:346412/158‑1 (MQ=255) ccGCCCAGTGTCGAGAGTAACCCATTGTGAATGATCAGCGATTTTGCCAGCGAGAAGTCGGCTTTTAGCGACAAATCCTTCACTTTTGCCAGACGAATAAAACAGAAACCGAGGTTAATGATCGCGTCGCCGCCCATGATGACAACATAGCTTGGCAGAGCGACATACAGTGGATCGACGCCAAGTGCGGCAGCGGCTTCATGCATCGGTTTTGCGGCGTTCATCGCAAAGGACATCCCGGCAGAGAAAAt < 1:275037/251‑1 (MQ=255) gCCCAGTGTCGAGAGTAACACATTGTGAATGATCAGCGATTTTGCCAGCGAGAAGTCGGCTTTTAGCGACAAATCCTTCACTTTTGCCAGACGAATAAAACAGAAACCGAGGTTAATGATCGCGTCGCAGCCCATGATGACAACATAGCTTGGCAGAGCGACATACAGTGGATCGACGCCAAGTGCGGCAGCGGCTTCATGCATCGGTTTTGCGGCGTTCATCGCAAAGGACATCCCGGCAGAGAAAATGc > 2:244907/1‑251 (MQ=255) cccAGTGTCGAGAGTAACACATTGTGAATGATCAGCGATTTTGCCAGCGAGAAGTCGGCTTTTAGCGCCAAATCCTTCCCTTTTGCCAGACGAATAAAACAGAAACCGAGGTTAATGATCGCGTCGCCGCCCATGATGACAACATAGCTTGGCAGAGCGACATACAGTGGATCGACGCCAAGTGCGGCAGCGGCTTCATGCATCGGTTTTGCGGCGTTCATCGCAAAGGACATCCCGGCAGAGAAAATGcc > 1:80247/1‑251 (MQ=255) gtCGAGAGTAACACATTGTGAATGATCAGCGATTTTGCCAGCGAGAAGTCGGCTTTTAGCGACAAATCCTTCACTTTTGCCAGACGAATAAAACAGAAACCGAGGTTAATGATCGCGTCGCCGCCCATGATGACAACATAGCTTGGCAGAGCGACATACAGTGGATCGACGCCAAGTGCGGCAGCGGCTTCATGCATCGGTTTTGCGGCGTTCATCGCAAAGGACATCCCGGCAGAGAAAATGCCGCACAt < 1:224204/251‑1 (MQ=255) gagaGTAACACATTGTGAATGATCAGCGATTTTGCCAGCGAGAAGTCGGCTTTTAGCGACAAATCCTTCACTTTTGCCAGACGAATAAAACAGAAACCGAGGTTAATGATCGCGTCGCCGCCCATGATGACAACATAGCTTGGCAGAGCGACATACAGTGGATCGACGCCAAGTGCGGCAGCGGCTTCATGCATCGGTTTTGCGGCGTTCATCGCAAAGGACATCCCGGCAGAGAAAATGCCGCACATCAc > 2:583518/1‑251 (MQ=255) gagTAACACATTGTGAATGATCAGCGATTTTGCCAGCGAGAAGTCGGCTTTTAGCGACAAATCCTTCACTTTTGCCAGACGAATAAAACAGAAACCGAGGTTAATGATCGCGTCGCCGCCCATGATGACAACATAGCTTGGCAGAGCGACATACAGTGGAGCGACGCCAAGTGCGGCAGCGGCTTCATGCATCGGGTTTGCGGCGTTCATCGCAAAGGACATCCCGGCAGAGAAAATGCCGCACATCACCg > 1:324579/1‑251 (MQ=255) gaacgaatagtgAATTATCAGCGATTTTGCCGGCGAGAAGTCGGCTTTTAGCGACAAATCCTTCCCTTTTGCCAGTCGAAGAAATCAGAAGCCGAGTTTAATGATCGCGTCGCCGCCCATGGTGACAACATAGCTTGGCGGAGCTACATACATTGGATCGCCGCCAATTGCAGCAGCGGCTTCTTGCATCGTTTTTGCTCCATTCTTCGCAAATTTCATCCCGGCTGAGAATATGCATCACATCACCGCCa < 2:374661/242‑1 (MQ=255) aTGATCAGCGATTTTGCCAGCGAGAAGTCGGCTTTTAGCGACAAATCCTTCACTTTTGCCAGACGAATAAAACAGAAACCGAGTTTAATGATCGCGTCGCCGCCCATGATGACAACATAGCTTGGCAGAGCGACATACAGTGGATCGACGCCAAGTGCGGCAGCGGCTTCATGCATCGGTTTTGCGGCGTTCATCGCAAAGGACACCCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCttt < 1:75941/251‑1 (MQ=255) aTTTTGCCAGCGAGAAGTCGGCTTTTAGCGACAAATCCTTCACTTTTGCCAGACGAATAAAACAGAAACCGAGGTTAATGATCGCGTCGCCGCCCATGATGACAACATAGCTTGGCAGAGCGACATACAGTGGATCGACGCCAAGTGCGGCAGCGGCTTCATGCATCGGTTTTGCGGCGTTCATCGCAAAGGACATCCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTg > 2:510796/1‑251 (MQ=255) ccAGCGAGAAGTCGGCTTTTAGCGACAACTCCTTCACTTTTGACAGACGAATAACACAGAAACCGAGGTTAATGATCGCGTCGCCGCCCATGATGCCAACATAGCTTGGCAGAGCGACATACAGTGGATCGACGCCAAGTGCGGCAGCGGCTTCATGCATCGGTTTTGCGGCGTTCATCGCAAAGGACATCACGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAAcact > 1:442495/1‑248 (MQ=255) aGCGAGAAGTCGGCTTTTAGCGACAAATCCTTCACTTTTGCCAGACGAATAAAACAGAAACCGAGGTTAATGATCGCGTCGCCGCCCATGATGACAACATAGATTGGCAGAGCGACATACAGTGGATCGACGCCAAGTGCGGCAGCGGCTTCATGCATCGGTTTTGCGGCGTTCATCGCAAAGGACATCCCGGCAGAGAAAATGCCGCAAATCACCACCAGCACCAGCCCttttttgcgatggaacacttc > 2:346905/1‑236 (MQ=255) aGCGAAAAGTCGGCTTTTAGCAACAAATCCTTCACTTTTGCCAGACGAATAAAACAGAAACCGAGGTTAATGACCGCGTCGCCGCCCATGATGACAACATAGCTTGGCAGAGCGACATACAGTGGATCGACGCCAAGTGCGGCAGCGGCTTCATGCATCGGTTTTGCGGCGTTCATCGCAAAGGACATCCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTc < 2:155016/251‑1 (MQ=255) gCGAGAAGTCGGCTTTTAGCGACAAATCCTTCACTTTTGCCAGACGAATAAAACAGAAACCGAGGTTAATGATCGCGTCGCCGCCCATGATGACAACATAGCTTGGCAGAGCGACATACAGTGGATCGACGCCAAGTGCGGCAGCGGCTTCATGCATCGGTTTTGCGGCGTTCATCGCAAAGGACATCCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCg < 1:341597/251‑1 (MQ=255) gagaAGTCGGCTTTTAGCGACAAATCCTTCACTTTTGCCAGACGAATAAAACAGAAACCGAGGTTAATGATCGCGTCGCCGCCCATGATGACAACATAGCTTGGCAGAGCGACATACAGTGGATCGACGCCAAGTGCGGCAGCGGCTTCATGCATCGGTTTTGCGGCGTTCATCGCAAAGGACATCCCGGCAGAGACAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGc > 2:551992/1‑251 (MQ=255) gaAGTCGGCTTTTAGCGACAAATCCTTCACTTTTGCCAGACGAATAAAACAGAAACCGAGGTTAATGATCGCGTCGCCGCCCATGATGACAACATAGCTTGGCAGAGCGACATACAGTGGATCGACGCCAAGTGCGGCAGCGGCTTCATGCATCGGTTTTGCGGCGTTCATCGCAAAGGACATCCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCtt > 1:31326/1‑251 (MQ=255) aaGTCGGCTTTTAGCGACAAATCCTTCCCTTTTGCCAGACGAATAAAACAGAACCCGAGGTTAATGATCGCGTCGCCGCCCATGATGACAACATAGCTTGGCAGAGCGACATACAGTGGATCGCCGCCAAGTGCGGCAGCGGCTTCATGCATCGGTTTTGCGGCGTTCATCGCAAAGGACACCCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCttt < 1:611219/251‑1 (MQ=255) gtcTTTTAGCGACAAATCCTTCACTTTTGCCAGACGAATAAAAAAGAAACCGAGGTTAATGATCGCGTCGCCGCCCATGATGACAACATAGCTTGGCAGAGCGACATACAGTGGATCGGCGCCAAGTGCGGCAGCGGCTTCATGCATCGGTTTTGCGGCGTTCATCGCAAAGGACATCCCGGCAGAGAAAATGCCGCACATCGCCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGc < 1:45087/249‑1 (MQ=255) cACTTTTGCCAGACGAATAAAACAGAAACCGAGGTTAATGATCGCGTCGCCGCCCATGATGACAACATAGCTTGGCAGAGCGACATACAGTGGATCGACGCCAAGTGCGGCAGCGGCTTCATGCATCGGTTTTGCGGCGTTCATCGCAAAGGACATCCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCATCTTGCGCTCTTTCAACt > 1:186839/1‑251 (MQ=255) ttGCCAGACAAAAAAAAAAGAAACCGAGGTTAATGATCGCGTCGCCGCCCATGATGACAACATAGCTTGGCAGAGCGACATACAGTGGATCGACGCCAAGTGCGGCAGCGGCTTCATGCAGCGGTTTTGCGGCGTTCATCGCAAAGGACATCCCGGCAGAGAAAATGCCGCACATCTCCGCCAGCACCAGCCCTTTTTTCAGAGTGAACTCTTCGGCTTTAATGCCCATCTTGCGCTCTTTCAACTGccc < 1:619414/250‑1 (MQ=255) tacaaaaCGAAAAAAACAGAACCCGAGGTTAATGAGCGCTTCCCCGCCGATGTGGACAACATATCTGGGCAGAGCGACATACAGTGGATCGACGCCAGGTGCGGCAGCGTCTTCATGCATCGGTTTTTCGGCGTTCATCGCAAGGGACAGCCCTGCAGAGAAAAGGCCGCATATCACCGCCAGCACCAGCCCTGTGTTCAGATTGAACTCTTCGGCTTTAATGCCCATCTTGCGCTCTTTCAACTGCCCg < 2:294358/244‑1 (MQ=255) tGCCAGACGAATAAAACAGAAACCGAGGTTAATGATCGCGTCGCCGCCCATGATGACAACATAGCTTGGCAGAGCGACATACAGTGGATCGACGCCAAGTGCGGCAGCGGCTTCATGCATCGGTTTTGCGGCGTTCATCGCAAAGGACATCCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTc > 1:569998/1‑199 (MQ=255) tGCCAGACGAATAAAACAGAAACCGAGGTTAATGAGCGCGTCGCCGCCCATGATGACAACATAGCTTGGCAGAGCGACATACAGTGGATCGACGCCAAGTGCGGCAGCGGCTTCATGCATCGGTTTTGCGGCGTTCATCGCAAAGGACATCCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTc < 2:569998/199‑1 (MQ=255) cGAATAAAACAGAAACCGAGGTTAATGATCGCGTCGCCGCCCATGATGACAACATAGCTTGGCAGAGCGACATACAGTGGATCGACGCCAAGTGCGGCAGCGGCTTCATGCATCGGTTTTGCGGCGTTCATCGCAAAGGACATCCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCATCTTGCGCTCTTTCAACTGCCCGGCGCGAGt > 1:283646/1‑251 (MQ=255) aaaaCAGAAAACGAGGTTAATGATAGCGTCGCCGCCCATGATGACAACATAGCTTGGCAGAGCGACATACAGTGGATCAACGCAAAGTGCGGCAGCGGCTCCATGAACAGGTCTTGCGGCGTTCACCGCAAAGGCCACCTCGGCACAGAAAATGACGAACATCACCGCCAGCAACAGCCCTTTTTTCAGATTGCAGTCTTCGACATTAATGCCCATCTTTCGCACGTTCAACTGCGCGGCTCGCGTTACa > 2:538907/1‑250 (MQ=255) aCAGAAACCGAGGTTAATGATCGCGTCGCCGCCCATGATGACAACATAGCTTGGCAGAGCGACATACAGTGGATCGACGCCAAGTGCGGCAGCGGCTTCATGCATCGGTTTTGCGGCGTTCATCGCAAAGGACATCCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCATCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATcc > 2:183224/1‑251 (MQ=255) aaaaCCGAGGTTAATGATCGCGTCGCCGCCCATGATGAAAACATAGCTTGGCAGAGCGACATACAGTGGATCGACGCCAAGTGCGGCAGCGGCTTCATGCATCGGTTTTGCGGCGTTCATCGCAAAGGACACCCCGGCAGAAAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCATCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTa < 1:280024/250‑1 (MQ=255) aaCCGAGGTGAATGAGCACGTAGCCGCCCGGGAGGACACCAGAGCTTGGCGAAGCGACATACAGTGGATGGATGCCAGTTGCGGCAGCGGCTTTATGCATGTGTTTTGCGTCGTTCACCGCAAAGAACATCCCGGCAGAGAAAATCCCGCCCACAACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCATCTTGCGCTCTTTCAACTGCCCGTCGCTAGTTACAATCCCTACg < 2:613190/251‑1 (MQ=255) gAGGATAATGATAGAGTCGCCGCCCATGATGACAACATAGTTTGGCAGAGCTACATACAGAGGATCGACGCCAAGTGCGCCAGCGGCTTCATGCATCGGTTTTGCGGCGTTCATCGCAAAGGACATCCCGGCAGAGAAAATGCCGCACATCAGCGTCAGCACCAGCCCTTTTTTCAGATTGCACTCTTCGGCTTTAATGCCCATCATGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCTTACGCCa > 2:250029/1‑250 (MQ=255) gggTTAATGATCGCGTCGCCGCCCATGGTGCCAACAGAGCTGGGCAGAGCGACCTACAGTGGTGCGACGCCAATTGCGGCAGCGGCTTCATGCATCGTTTTTGCGGCTTTCACCGCAAAGGACATCCCGGCAGAGAAAATTCCGCACATCTCCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCATCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAAt < 2:439971/250‑1 (MQ=255) ttAATGATCGCGTCTCCGCCCATGATGACAACATAGCTTGGCAAAGCGACATACAGTGGATCTACGCCAAGTGCGGCAGCGGCTTCATGCATCGGTTTTGCGGCGTTCATCGCAAAGGACATCCCGGCAGCGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGTCTTTAATGCCCATCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTCCAATCCCTACGCCAATccc > 2:654822/1‑249 (MQ=255) ttAATGATCGCGACGCCGGCCATGATGACAACATAGCTTGGCAGAGCGACATCCAATGGGTCGAAGCCAAGTACGGCAGAGGCTTCCTGCATCGGTTTTGCGGAGATCATCGAAAAGGACATCCCGGCAGAGAAAATGCCGCACATCAACGCCAGCACCAGACCTTTTTTCAAATTAAAACCTTCGGCTTTAATACCCATCTTGCGCTTTGTCAACTAGCCGGCGAGGGTTACAATGCCTACGCCAATc > 2:580892/1‑249 (MQ=255) tAATGATCGCGTCGCCGCCCATGATGACAACATAGCTTGGCAGAGCGACATACAGTGGATCGACGCCAAGTGCGGCAGCGGCTTCATGCATCGGTTTTGCGGCGTTCATCGCAAAGGACATCCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCATCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAgc > 1:209889/1‑251 (MQ=255) tGATCGCGTCGCCGCCCATGATGACAACATAGCTTGGCAGAGCGACATACAGTGGATCGACGCCAAGTGCGGCAGCGGCTTCATGCATCGGTTTTGCGGCGTTCATCGCAAAGGACATCCCGGCAGAGAAAATGCCGCACATCACCGCCAGCAcc > 1:106329/1‑155 (MQ=255) tGATCGCGTCGCCGCCCAGGATGACAACATAGCTTGGCAGAGCGACATACAGTGGATCGACGCCAAGTGCGGCAGCGGCTTCATGCATCGGTTTTGCGGCGTTCACCGCAAAGGACATCCCGGCAGAGAAAATGCCGCACACCACCGCCAGCAcc < 2:106329/155‑1 (MQ=255) tGATCGCGTCGCCGACCATGATGACAACATAGCTTGGCAGAGCGACATACAGTGGATCGCCGCCAAGTGCGGCAGCGGCTTCATGAATCGGTTTTGCGGCGTTCATCGCAAAGGACATCCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCATCGGCTTTAATGCCCATCTTGCGCTCTTTCAACTGCCCGGAGCGAGCTACAATCCCTACGACAATCAGCGcc > 1:214472/1‑251 (MQ=255) gATCGCGTCGCCGCCCATGATGACAACATAGCTTGGCAGAGCGACATACAGTGGATCGACGCCAAGTGCGGCAGCGGCTTCATGCATCGGTTTTGCGGCGTTCATCGCAAAGGACATCCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCATCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGccc > 1:571630/1‑250 (MQ=255) gATCGCGTCGCCGCCCATGATGACAACATAGCTTGGCAGAGCGACATACAGTGGATCGACGCCAAGTGCGGCAGCGGCTTCATGCATCGGTTTTGCGGCGTTCATCGCAAAGGACATCCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCATCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGcc > 1:175339/1‑250 (MQ=255) gATCGCGTCGCCGCCCATGATGAAAACATAGCTTGGCAGAGCGACATACAGTGGATCGACGCCAAGGGCGGCAGCGGCTTCAGGCATCGGTTTTGCGGCTTTCATCGCAAAGGACATCCCGGCAGAGAAAAGGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCATCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGcca < 1:479696/251‑1 (MQ=255) | GACGATACCGCCGCACAATACATAGAAACTCATATGCAGCATCCAACTGATGTAGTCATACTGCGCCGGAATGCGGGCGTGGCCCCAGGCATAGAAAAAGAATTGCAGATACCACATCAACCCGCCCAGTGTCGAGAGTAACACATTGTGAATGATCAGCGATTTTGCCAGCGAGAAGTCGGCTTTTAGCGACAAATCCTTCACTTTTGCCAGACGAATAAAACAGAAACCGAGGTTAATGATCGCGCCGCCGCCCATGATGACAACATAGCTTGGCAGAGCGACATACAGTGGATCGACGCCAAGTGCGGCAGCGGCTTCATGCATCGGTTTTGCGGCGTTCATCGCAAAGGACATCCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCATCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCA > NC_000913/4099608‑4100098 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |